Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271914g00031 ATGGCTTCACAATCGCCACCTTCTCCCTTGGACGACGCCCTTCCCGATGTCAAAGACTATGTCTGGGAAAAAGAATCAGATAGCTTGCCCTGGGACACACTTCGCCATCTTTACGAGCTCGTGCAGAGTGGCAATCAAGCATTTCGAGACAACAGAATGGAAGAGGCTATCAGCTTTTATTCACGAGCCAATAACATTAAATCTGCTGATCCAATCATCCTCACCAATCGCTCTGCTGCTTATATTAGGATCAGTCAATATTTAAAGCATAGAACTCCATCGGCTTCAGAACATAGACCATTGAGTGGGCTTGATCCTACAACACTTGCTGAACTGGGTTTGAAGGATGCTGAGAAGCTTCTTGACCTTCAAAGTAATTCAGTAAATCCGTACATTTTAAAGGTCAATGCATTATTTCTGTTGGAGAAATATGAGAAAGCCCGGGAAGTTATTCTTTCAGGCCTTCAAGTTGATCCATTTAGCAATCCTCTTCAAGCTTCTCTTCGGAATTTGGAAAGGCTGTCATCTAGTTCAACAACGATAAATAGACATGCACAACCAGAGCGAAATGATGAGTTTGATTGCACTCTCTGCCTGAAGTTGCTATTCGAACCTGTTACAACCCCTTGTGGTCATTCATTTTGCCGTCCATGTCTATTTCAGTCAATGGATTCTGGGAACAGATGCCCTCTGTGCAGAACAGTTCTGTTTATTAGTCCAAGAACATGTTCAATCAGTGTGACATTGAAGAACATAATAGAGAAGAACTTCCCTGAGGAGTATGCAGAACGGAAGCAAGAGCATGACAGTTTAATCAACCCTGGTGTAGATTTGCTGCCCCTCTTTGTTATGGACGTTGTCATACCATGTCAAAAGTTTCCGCTCAATATATTTGAACCTCGGTATAGATTGATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGTTATCACTGATTCTTCAACAGGTTCCTTAGCTGAGTATGGTTGTGAAGTGGAAATCACTGAGTGTGAGCCACTACCAGATGGTCGTTTCTATATAGAGATTGAAAGTCGAAGGAGATTTCGCATCATCCGTTCATGGGATCAGGATGGGTATCGTGTTGCTCAGGTTGAATGGGTTCAGGATATTATGCCAGCAGAAGGGACAAAAGAAAGAGAGATTTTACAGGAATTGACATGCAATGCAGCAGAAAATGCTCGATCGTGGATAAGAAGAGCCAGAGAAGCAACAAGACTAGATCAAAGAAGGATTGAGAGACTCTTGAATGTTGAAGCAATGATGCCATCGACACAAGACCCAGAGCGTTTCAGTTTCTGGGTGACTACATATCTGAGTTCTTTTTCATGTTTGTTTGAAAATTCATTGAAGTAA 1383 0.4215 MASQSPPSPLDDALPDVKDYVWEKESDSLPWDTLRHLYELVQSGNQAFRDNRMEEAISFYSRANNIKSADPIILTNRSAAYIRISQYLKHRTPSASEHRPLSGLDPTTLAELGLKDAEKLLDLQSNSVNPYILKVNALFLLEKYEKAREVILSGLQVDPFSNPLQASLRNLERLSSSSTTINRHAQPERNDEFDCTLCLKLLFEPVTTPCGHSFCRPCLFQSMDSGNRCPLCRTVLFISPRTCSISVTLKNIIEKNFPEEYAERKQEHDSLINPGVDLLPLFVMDVVIPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMVITDSSTGSLAEYGCEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAQVEWVQDIMPAEGTKEREILQELTCNAAENARSWIRRAREATRLDQRRIERLLNVEAMMPSTQDPERFSFWVTTYLSSFSCLFENSLK 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271914g00031 460 ProSiteProfiles Lon N-terminal domain profile. 276 460 IPR003111 -
Stsc271914g00031 460 SMART ring_2 195 232 IPR001841 -
Stsc271914g00031 460 Pfam Zinc finger, C3HC4 type (RING finger) 195 232 - -
Stsc271914g00031 460 PANTHER RING FINGER PROTEIN 127 28 449 - -
Stsc271914g00031 460 SUPERFAMILY TPR-like 38 166 IPR011990 GO:0005515
Stsc271914g00031 460 Gene3D Tetratricopeptide repeat domain 36 173 IPR011990 GO:0005515
Stsc271914g00031 460 SMART lon_5 278 460 IPR003111 -
Stsc271914g00031 460 Gene3D - 277 379 IPR046336 -
Stsc271914g00031 460 Pfam ATP-dependent protease La (LON) substrate-binding domain 279 449 IPR003111 -
Stsc271914g00031 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 273 IPR013083 -
Stsc271914g00031 460 SUPERFAMILY RING/U-box 189 258 - -
Stsc271914g00031 460 SUPERFAMILY PUA domain-like 279 447 IPR015947 -
Stsc271914g00031 460 ProSiteProfiles Zinc finger RING-type profile. 195 233 IPR001841 -
Stsc271914g00031 460 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Stsc271914g00031 460 CDD RING-HC_LONFs_rpt2 192 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271914g00031 Stsc-Chr271914 137465 143300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271914g00031 188 236 C3H Transcription Factor Family AT1G74990 38.462 1.49e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271914g00031 - - lja:Lj0g3v0312049.1 725.317