Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271914g00022 ATGGAAAACATTTGTTCAATTATGTACAACAAGGAAGAGGTTGAGATGGATTTGCCACCAGGGTTCAGGTTTCACCCAACTGATGAAGAGCTTATAAGTCACTACCTTTACAACAAGGTCATTAACACCAACTTTTCAGCCAGAGCCATTGGTGAGGTAGATTTGAATAGGTCTGAGCCTTGGGATTTGCCATGGAAGGCTAAGATGGGTGAAAAAGAGTGGTACTTTTTCTGTGTAAGGGACAGAAAATACCCAACAGGATTGAGGACAAATAGAGCAACAGAAGCTGGGTATTGGAAGGCTACAGGGAAAGACAAGGAGATATACAGAGGCAAATCACTTGTTGGGATGAAGAAGACACTTGTGTTCTACAAAGGTAGAGCTCCCAAAGGTGAGAAATCTGATTGGGTGATGCATGAGTTCAGGCTTGATGGTAAATTCAATCCACACAACCTCCCCAAATCTGCAAAGAAGGAGTGGGTGATTTGCAGGGTTTTCCAGAAGAGTTCATCCGGTAAGAAAATCCATATTTCTGGGATAATGAGGTTGGACTCCTCTTCTTATGGCAACCATCACCATCACCAACACCAACTAGGTTCTTCTGTTGTGTTGCCACCATTGGCAGATTGCTCACCTTGCAAGACTACTACTACAACAGCAGCTTACGTGCCCTGCTTCTCCAATCCAATTATTGATGATGAAAGGAACAACAACCAAGTTGGGATGTTTGATCCTTTTGGTGCTTCTCCATTGGCAGATTCCGCATACACCACTCATCATCAGGACCATTCAATTCTTAGAGCCTTGCTTCAAAACAATTGTTCAGACCTCAAGACTGCTTTCAAAGCTGCTGCTGCAGACAGTAATGAAACTCCCCCACAACAGGACCTTGCCACCCTCTGGAATTACCACGTTCAGATCAAGTAG 927 0.4391 MENICSIMYNKEEVEMDLPPGFRFHPTDEELISHYLYNKVINTNFSARAIGEVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYKGRAPKGEKSDWVMHEFRLDGKFNPHNLPKSAKKEWVICRVFQKSSSGKKIHISGIMRLDSSSYGNHHHHQHQLGSSVVLPPLADCSPCKTTTTTAAYVPCFSNPIIDDERNNNQVGMFDPFGASPLADSAYTTHHQDHSILRALLQNNCSDLKTAFKAAAADSNETPPQQDLATLWNYHVQIK 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271914g00022 308 ProSiteProfiles NAC domain profile. 18 168 IPR003441 GO:0003677|GO:0006355
Stsc271914g00022 308 FunFam NAC domain-containing protein 100-like 27 172 - -
Stsc271914g00022 308 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 244 - -
Stsc271914g00022 308 SUPERFAMILY NAC domain 10 168 IPR036093 GO:0003677|GO:0006355
Stsc271914g00022 308 Pfam No apical meristem (NAM) protein 19 143 IPR003441 GO:0003677|GO:0006355
Stsc271914g00022 308 Gene3D NAC domain 27 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271914g00022 Stsc-Chr271914 91732 93204 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271914g00022 16 273 NAC Transcription Factor Family AT5G07680 60.000 5.48e-114 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc271914g00022 NAM 1.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271914g00022 - - ahf:112708225 439.499