Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271914g00021 ATGATTAATGTTGTAGGGAAGGCTAAGATGGGTGAAAAAGAGTGGTACTTTTTCTGTGTAAGGGACAGAAAATACCCAACAGGATTGAGGACAAATAGAGCAACAGAAGCTGGGTATTGGAAGGCTACAGGGAAAGACAAGGAGATATACAGAGGCAAATCACTTGTTGGGATGAAGAAGACACTTGTGTTCTACAAAGGTAGAGCTCCCAAAGGTGAGAAATCTGATTGGGTGATGCATGAGTTCAGGCTTGATGGTAAATTCAATCCACACAACCTCCCCAAATCTGCAAAGAAGGAGTGGGTGATTTGCAGGGTTTTCCAGAAGAGTTCATCCGGTAAGAAAATCCATATTTCTGGGATAATGAGGTTGGACTCCTCTTCTTATGGCAACCATCACCATCACCAACACCAACTAGGTTCTTCTGTTGTGTTGCCACCATTGGCAGATTGCTCACCTTGCAAGACTACTACTACAACAGCAGCTTACGTGCCCTGCTTCTCCAATCCAATTATTGATGATGAAAGGAACAACAACCAAGTTGGGATGTTTGATCCTTTTGGTGCTTCTCCATTGGCAGATTCCGCATACACCACTCATCATCAGGACCATTCAATTCTTAGAGCCTTGCTTCAAAACAATTGTTCAGACCTCAAGACTGCTTTCAAAGCTGCTGCTGCAGACAGTAATGAAACTCCCCCACAACAGGACCTTGCCACCCTCTGGAATTACCACGTTCAGATCAAGTAG 750 0.4413 MINVVGKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYKGRAPKGEKSDWVMHEFRLDGKFNPHNLPKSAKKEWVICRVFQKSSSGKKIHISGIMRLDSSSYGNHHHHQHQLGSSVVLPPLADCSPCKTTTTTAAYVPCFSNPIIDDERNNNQVGMFDPFGASPLADSAYTTHHQDHSILRALLQNNCSDLKTAFKAAAADSNETPPQQDLATLWNYHVQIK 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271914g00021 249 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 189 - -
Stsc271914g00021 249 FunFam NAC domain-containing protein 100-like 2 113 - -
Stsc271914g00021 249 Gene3D NAC domain 2 113 IPR036093 GO:0003677|GO:0006355
Stsc271914g00021 249 Pfam No apical meristem (NAM) protein 6 84 IPR003441 GO:0003677|GO:0006355
Stsc271914g00021 249 ProSiteProfiles NAC domain profile. 1 109 IPR003441 GO:0003677|GO:0006355
Stsc271914g00021 249 SUPERFAMILY NAC domain 5 109 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271914g00021 Stsc-Chr271914 91732 93204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271914g00021 8 244 NAC Transcription Factor Family AT5G61430 50.000 8.29e-84 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc271914g00021 NAM 8.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271914g00021 - - ahf:112708225 324.324