Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271914g00015 ATGAAGATGGTTGACAATAAGGACCCTGCAATTACTCTCTTTGGCAAGAAGATTCCCTTTCCAGGTCCGGGTGAATTAGAGGATGAAGAGGAGGAGAAACACAAGGATGGTCGTCCAGCTGATGAAGTTACTGAGAAAAAGAAAGAGGAGGAAAGTGCAAAGCAAAAGAAGGAGGAAGAGAAGGCAGTGAAGAAGCCGGATAAAGTGGTTCCATGTCCGCGCTGCAACAGCATGGACACCAAGTTCTGCTACTACAACAACTATAACGTGAACCAGCCACGCTACTTCTGCAAAGCCTGCCAAAGATACTGGACAGCAGGCGGCACCATGAGGAATGTCCCCGTTGGGGCAGGCAGGAGAAAGAACAAGAACACCTCCTCCTCGCACTATCGCCACATCACCATCTCTCAGGCTCTTCAAGCACCTACCAATTCCACACTCCTAAGCTTTGGATTGGATACACCATCACCCAATCCCATATGTGAGCCTTGCAAAACTGGAGACAATAATGGTGATGACTGCTCAACTGCATCTTCAATTACCATGGACGAAACAGCATCTCAAGAGCCTTTACCACAAGCCAATGGATTCATTCCTCCCCAAGTACAAGTACAATTGCCATGGCCTTTCTCTCCTCCTGGATTTCCCATTTCATTCTACCCTGCGCCTTTTTGGAATTGGAATGTTCCCTGCTTCCCCTCGCATCCATATACACCAAATCAAAACTCTTGGAATTCTCCAACCCTAGGGAAGCACTCCAGGGATGCTGATAGAAATGGGTGTGTTTTGGTTCCCAAAACTTTAAGAATTGATGATCCAATTGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATCAAGAATGAAGGTGTCAGTTTTAAGGCCTTCCAATCAAAGAAGGAAGAGAAGAACAAAGTTGTTGAAACCTCTCCGATGCTGCTGGCTAACCCTGCAGCCTTGTGTAGATCCCTTCATTTTCATGAGAACTCCTGA 996 0.4639 MKMVDNKDPAITLFGKKIPFPGPGELEDEEEEKHKDGRPADEVTEKKKEEESAKQKKEEEKAVKKPDKVVPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNTSSSHYRHITISQALQAPTNSTLLSFGLDTPSPNPICEPCKTGDNNGDDCSTASSITMDETASQEPLPQANGFIPPQVQVQLPWPFSPPGFPISFYPAPFWNWNVPCFPSHPYTPNQNSWNSPTLGKHSRDADRNGCVLVPKTLRIDDPIEAAKSSIWATLGIKNEGVSFKAFQSKKEEKNKVVETSPMLLANPAALCRSLHFHENS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271914g00015 331 ProSiteProfiles Zinc finger Dof-type profile. 70 124 IPR003851 GO:0003677|GO:0006355
Stsc271914g00015 331 MobiDBLite consensus disorder prediction 1 68 - -
Stsc271914g00015 331 Coils Coil 40 63 - -
Stsc271914g00015 331 ProSitePatterns Zinc finger Dof-type signature. 72 108 IPR003851 GO:0003677|GO:0006355
Stsc271914g00015 331 MobiDBLite consensus disorder prediction 22 68 - -
Stsc271914g00015 331 PANTHER CYCLIC DOF FACTOR 2 6 331 IPR045174 GO:0003700|GO:0006355
Stsc271914g00015 331 Pfam Dof domain, zinc finger 67 124 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271914g00015 Stsc-Chr271914 51990 53719 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271914g00015 3 329 C2C2-Dof Transcription Factor Family AT5G62430 48.256 1.73e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc271914g00015 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271914g00015 - - aip:107629495 402.134