Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271913g00015 ATGACTTCTCAACTAAGTTTTGTAGTTGGATCTCATATTTGGATTGAGGACCAAGATGAAGCTTGGATTAAAGGAGAAATTTTGGAATCTAGTGGTAATGAGGTCACAGTTAATTGTGCTTCAGGGACAAAGGTTATCAGTAAATCATGTCAAATCTATCCCAAAGATCCTGAGTTCCCACCTAATGGAGTGGAAGATATGACGAGGTTGGCATATCTGCATGAACCAGGGACTTACACAGGAAATATATTGATAGCTGTAAACCCTTTCCAACGATTACCTCATTTATATGCCAAGGAAACAATGGATATGTATAAAGGTGCGGCTTTTGGTGAAAAGAGCCCAAACCCCTTTGCCATTGCTGATTCTGCATACAGGAAGATGATAAATGAAGCAACAAGCCAATCCATCTTAGTTAGCGGAGAAAGTGGAGCTGGTAAAACAGAAAGCACTAAAATGCTTATGTGTTATCTTGCTTATATGGGAGGCAGAGCAGCTAGCGAAGGACGTTCAGTAGAGCAACAAGTCTTGGAGTCCAATCCTGTTTTAGAAGCATTTGGCAATGCCAAGACTGTTAGGAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCAAAAGGGGAGAATTTCAGGAGCTGCTATCAGAACTTATTTGCTGGAACGATCTCGTGTCTGTCAGGTTTCTGATCCTGAGAGAAATTATCATTGCTTTTATATGCTTTGTGCTGCACCAAAAGAGGATGTTGAAAAGTACAAATTGGGAGACCCAAAAACTTTTCATTACCTAAATCAATCGAATTGCATTGAGCTGCAAGGCTTGGATGACTCTAAGGAATACCTTGCAACTAGGAGAGCTATGGATGTTGTTGGGATCAATTCTAATGAGCAGGATGCTATATTTCGAATAGTAGCTGCAGTGCTACACTTGGGAAATATTGAATTTGTTAAGGGGGACGATGAAGAGACTGATTCCTCTAAACCTAAGGATGACAAATCTCGTTTCCACCTTAAAACTGCAGCTGAGCTTTTGATGTGTGACGAGAATGCCCTTGAGGACTCATTTTGCAAACGTGTTATGGTCACTCGTGGTGACACAATAACAAAGTCACTTGATCCCGTTGCTGCTGCTCTCAGCAGAGATGCATTGGCTAAAATTGTTTATTCAAGGCTTTTCGATTGTTTTGAGCAATTCTGTATCAATTTGACTAATGAGAAACTGCAACAGCATTTCAACCAGCATGTCTTCAAAATGGAGCAAGAAGAATATACAAAGGAAGAAATCAATTGGAGTTATATAGAGTTTGTGGATAATCAAGATGTTCTTGACCTCATAGAAAAGAAACCAGGTGGCATTATTGCTCTTCTAGATGAGGCATGCATGTTTCCAAGATCAACACATGAAACATTTGCCGAAAAGCTATATCAAACATTTAAAGACAATAAACGGTTCAGCAAGCCAAAGTTATCTCGTACGGATTTCACAATAAACCACTATGCTGGTGATGTGACTTATCAAACAGAACTTTTCCTTGATAAGAACAAAGACTATGTTGTTCCAGAGCATGCTGCCTTACTCAATGCTTCAAAGTGCGACTTCGTTTCAGGGTTGTTCCCACCCTTACCTGAGGAAACGTCCAAATCAACCAAGTTTGCTTCAGTTGCCACTCAGTTTAAACAACAGCTACAGTCTTTACTGGAAACACTAAACGCTACCGAGCCACACTACATCCGCTGTGTAAAGCCCAATAACCTTCTTAAGCCTGGGATATTTGAGAACAATAATGTGTTGCAACAGCTACGATGCGGTGGAGTAATGGAGGCAATACGAATTAGTTGTGCCGGATATCCTACCAGGAAGAACTTTGATGAATTCATTAAACGATTTAGTATCCTAGAACCTAAGGTTCTTACAGCATGCCCTGATGAAAAGGCCGGTTGCCAGATGCTTCTTGATAAAGTGAACCTTAAAGATTATCAGATTGGAAAGACAAAAGTGTTTCTAAGAGTAGGACAAATGGCACATCTAGATGCCTTTAGAGCAGAGGTATTAGGAAGATCTGCAAGCATTATTCAAAGAAAAGTTCGCACACATCTTTGCCAAATACACTACAATATATTGCGCATGTCTGCAATAGAACTACAAAGGGTAGCCAGAGGAGTACTTGCACGCTGTCTTTATGAAAAAATGAGGAGGGAAGATGCTTCTGTGAAAATTCAAAAGAACTTTCGCATGCATATTTTCAGGGATTCTTATCAAGCCCTGCAGGCTTCTGCTGTATTTATTCAGACTGCTATGAGAGGCAAGCATGCTAGAAGTCAACTCAGATATAAGAAGTTAACCAGAGCTGCAGTGATCATTGAGGCTGCTAAGGAAGCCAAGGCTCTTGAAGCTGCAAAAAAAGAACTTGAAAAGCAAGTGGAAGAATTGAGTTTGTCTTTAGAATCGGAGAAAAGAATGAGGGAAGCCGAGACACAGGAAAATGAAAAATTACAATCAGCTTTGCAAGAGATGGAGCAACAACTCAAAGAAACTCAGGAGTTGCTTCTTAAAGAACGCCAGGCTCCTAAAACTACTGACGCAACAACTATGCAAGTTATTCAATCTAACGGAACTGATACTGATATGGAATTGATTATCAAGCTTACCGCAGAAAATGAACAACTCAAGGGTTTGGTTAATTCATTGGAAAAGAAAACCACCACGCTAGAGATTCCCAGCAATATGACTGAGAATGAAGTGATCAACAAGCTTTCTTCAGAGAGGGAACTTCTTATGAATCAAGTTAGTTCACTAGAAAAGAAAATCAACGAAACAGAAAGGAAATATGAGGAATGTAGCAAACTCAGTGAAGAGCGGATGAATCAAATCATAGAGACCGAAAGCAAGATAATTGAGCTAAAGACATCAATGCAAAGGCTTGAAGAAAAAGTTTCTGATATGGAAACTGAGAATCAAGTTTTAAGGCAGCAAACCCTTTTGAGTTCGTCATCAAAGAAAATGTCAGACAAGGCTGCTACTGCAGTTCAGTCATCGGAAAATGGTACTAATCAGGCATCAACATCATCAAATTTGAGCCAGACAAAGACATTTGGAACCGATGCCGATAGTAAAGAGAGCATCGAAAGTCTATTCAAATGCGTCCAAAAAGACCTTGGATTCTCGGAAGGAAAACCGGTGGCAGCATTTACCCTCTATAACTGTCTGCTACATTGGAGATGTTTTGAAGCAGAAAAGACAAGTATATTTGATCGTCTTATTATGCTGATTGGATCTGCAATAGAGGATCAAGATAACAATGTTTGCATGGCTTATTGGTTGTCCAACACATCTACTTTGTTGTTCCATCTCCAGCGAACTCTCAGAGTACCTACAGCACGAAAGCCCCCCACTCCAACATCTTTCTTTGGAAGAGTCACCCAGGGATTTCGGTCATCCAAAAGTCTTTCTAGTGGTTCATTTGATGTAGAGCATCAAGTTGATGCCAAGTACCCTGCTCTGCTTTTCAAGCAACAACTTGCAGCTTACGTTGAGAAGATTTATGGCATTCTTAGAGAAAATTTGAAGAAAGACATATCACCTCTAATTTCTTCTTTCATTCAGGCTCATGGAATGTCAGATGATAGCAACCAGCCAGCTGCTTCATGGACTGGCATTGTACAATGCATTAACAAATATCTCAATGTTTTCAAAGAAAACCATGTGCATCCAGTTCTCGTTCAGAAGATACTCAGCCAAGTTTTTCAATATATTAATGTGGAAATCTTTAATAGCCTTGTTTCACAAAAAGAATGTTGCACATTCAACAATGGACAACTTATCAAATCAGGATTGGCTGAACTGGAACAATGGTCCACTGAAGCAACAGAAGAGGTTGCAGAGAAAAAGGATGAATTATCATATGATAGTCTTACAAATGAACTATGCCCTGTCCTTAGTTCTCACCAGCTTTACAGAATATGTACACTTTACTGGGATGGAAATGAAAATGACAATAACCAAAGTGTATCAGCTGATGTCATCTCTAGTTTGAAGCTTCTAACGACAGATGGTGTAGAAGATGATAGTAAATCGTACTTGTTAGAAGACAATTCAAGTATCCCTATTAGTGTTGAGGAGGTGTCTAGCTCCCTCAAAGATAGGCCCACTTCAAAAGTAAAACCTCCTGAAGAACTTCTTGAGTATGCAAGCTTCCAATTTTTACATGACTATTCTTAA 4230 0.3955 MTSQLSFVVGSHIWIEDQDEAWIKGEILESSGNEVTVNCASGTKVISKSCQIYPKDPEFPPNGVEDMTRLAYLHEPGTYTGNILIAVNPFQRLPHLYAKETMDMYKGAAFGEKSPNPFAIADSAYRKMINEATSQSILVSGESGAGKTESTKMLMCYLAYMGGRAASEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPKEDVEKYKLGDPKTFHYLNQSNCIELQGLDDSKEYLATRRAMDVVGINSNEQDAIFRIVAAVLHLGNIEFVKGDDEETDSSKPKDDKSRFHLKTAAELLMCDENALEDSFCKRVMVTRGDTITKSLDPVAAALSRDALAKIVYSRLFDCFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAEKLYQTFKDNKRFSKPKLSRTDFTINHYAGDVTYQTELFLDKNKDYVVPEHAALLNASKCDFVSGLFPPLPEETSKSTKFASVATQFKQQLQSLLETLNATEPHYIRCVKPNNLLKPGIFENNNVLQQLRCGGVMEAIRISCAGYPTRKNFDEFIKRFSILEPKVLTACPDEKAGCQMLLDKVNLKDYQIGKTKVFLRVGQMAHLDAFRAEVLGRSASIIQRKVRTHLCQIHYNILRMSAIELQRVARGVLARCLYEKMRREDASVKIQKNFRMHIFRDSYQALQASAVFIQTAMRGKHARSQLRYKKLTRAAVIIEAAKEAKALEAAKKELEKQVEELSLSLESEKRMREAETQENEKLQSALQEMEQQLKETQELLLKERQAPKTTDATTMQVIQSNGTDTDMELIIKLTAENEQLKGLVNSLEKKTTTLEIPSNMTENEVINKLSSERELLMNQVSSLEKKINETERKYEECSKLSEERMNQIIETESKIIELKTSMQRLEEKVSDMETENQVLRQQTLLSSSSKKMSDKAATAVQSSENGTNQASTSSNLSQTKTFGTDADSKESIESLFKCVQKDLGFSEGKPVAAFTLYNCLLHWRCFEAEKTSIFDRLIMLIGSAIEDQDNNVCMAYWLSNTSTLLFHLQRTLRVPTARKPPTPTSFFGRVTQGFRSSKSLSSGSFDVEHQVDAKYPALLFKQQLAAYVEKIYGILRENLKKDISPLISSFIQAHGMSDDSNQPAASWTGIVQCINKYLNVFKENHVHPVLVQKILSQVFQYINVEIFNSLVSQKECCTFNNGQLIKSGLAELEQWSTEATEEVAEKKDELSYDSLTNELCPVLSSHQLYRICTLYWDGNENDNNQSVSADVISSLKLLTTDGVEDDSKSYLLEDNSSIPISVEEVSSSLKDRPTSKVKPPEELLEYASFQFLHDYS 1409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271913g00015 1409 Coils Coil 961 995 - -
Stsc271913g00015 1409 Gene3D - 399 545 - -
Stsc271913g00015 1409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 737 IPR027417 -
Stsc271913g00015 1409 PRINTS Myosin heavy chain signature 181 208 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc271913g00015 1409 PRINTS Myosin heavy chain signature 77 96 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc271913g00015 1409 PRINTS Myosin heavy chain signature 134 159 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc271913g00015 1409 PRINTS Myosin heavy chain signature 382 410 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc271913g00015 1409 PRINTS Myosin heavy chain signature 435 463 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc271913g00015 1409 ProSiteProfiles Myosin motor domain profile. 78 685 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc271913g00015 1409 Gene3D - 11 55 IPR008989 GO:0003774|GO:0005524|GO:0051015
Stsc271913g00015 1409 ProSiteProfiles Dilute domain profile. 1088 1388 IPR002710 -
Stsc271913g00015 1409 Pfam IQ calmodulin-binding motif 738 756 IPR000048 GO:0005515
Stsc271913g00015 1409 Pfam IQ calmodulin-binding motif 712 731 IPR000048 GO:0005515
Stsc271913g00015 1409 Pfam DIL domain 1247 1330 IPR002710 -
Stsc271913g00015 1409 Coils Coil 883 903 - -
Stsc271913g00015 1409 Pfam Myosin N-terminal SH3-like domain 10 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc271913g00015 1409 Coils Coil 1282 1302 - -
Stsc271913g00015 1409 Coils Coil 919 953 - -
Stsc271913g00015 1409 FunFam Class V myosin 394 529 - -
Stsc271913g00015 1409 SMART MYSc_2a 56 686 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc271913g00015 1409 Gene3D - 739 790 - -
Stsc271913g00015 1409 Gene3D - 688 738 - -
Stsc271913g00015 1409 Coils Coil 790 859 - -
Stsc271913g00015 1409 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc271913g00015 1409 SMART DIL_2 1246 1334 IPR002710 -
Stsc271913g00015 1409 PANTHER MYOSIN 54 1336 - -
Stsc271913g00015 1409 Gene3D - 620 683 - -
Stsc271913g00015 1409 Gene3D Kinesin motor domain 547 619 IPR036961 -
Stsc271913g00015 1409 ProSiteProfiles IQ motif profile. 759 788 IPR000048 GO:0005515
Stsc271913g00015 1409 SMART iq_5 687 709 IPR000048 GO:0005515
Stsc271913g00015 1409 SMART iq_5 710 732 IPR000048 GO:0005515
Stsc271913g00015 1409 SMART iq_5 758 780 IPR000048 GO:0005515
Stsc271913g00015 1409 SMART iq_5 735 757 IPR000048 GO:0005515
Stsc271913g00015 1409 MobiDBLite consensus disorder prediction 997 1036 - -
Stsc271913g00015 1409 ProSiteProfiles IQ motif profile. 736 762 IPR000048 GO:0005515
Stsc271913g00015 1409 Pfam Myosin head (motor domain) 398 673 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc271913g00015 1409 Pfam Myosin head (motor domain) 78 397 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc271913g00015 1409 Gene3D Myosin VI head, motor domain, U50 subdomain 293 398 - -
Stsc271913g00015 1409 Gene3D Kinesin motor domain 60 278 IPR036961 -
Stsc271913g00015 1409 FunFam Myosin heavy chain 237 292 - -
Stsc271913g00015 1409 CDD MYSc_Myo11 78 673 IPR036018 -
Stsc271913g00015 1409 ProSiteProfiles IQ motif profile. 711 740 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271913g00015 Stsc-Chr271913 121961 130609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271913g00015 1 1406 Myosins gene family AT5G43900 57.152 0.0 1719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271913g00015 K10357 - mnt:21394610 1716.44