Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271913g00008 ATGGGTTGGCCCTTCCTTGGAGAGACTTTCAAACTCTACACTCAAAACCCCAATTCCTTCTTCTCCAACAGACAAAAACGATATGGAGAGATATTCAAGACGCACATACTGGGGTGCCCGTGCGTGATGATATCAGAGCCAGAGGCGGCAAGAGTGGTGCTGGTGAGCCAAGCGCATCTCTTCAAGGCAACATATCCACCAAGCAAAGAGAAGCTCATTGGCCCCCAAGCTGTCTTCTTTCAACAAGGCTCATATCACTCAATGCTCAAGAAACTCGTTCACAACTCTTTCTTGCCCTCCAAAATCAAGGACTCAGTCTCCCAGGTTGAGCGTATTCTCCTCAATTTCTTGCCTACTTGGACCAACAAAAACATCAACACCTTGCAAGAGATGAAAAAGTATGCTTTCCAAGTGGCTGCAATGTCGGCCTTTGGTGAAACAATGGAGGTGATGGAAATGGAAGAAATTAGCAAACTGTACAGGTGCTTGGAGAAAGGATACAACTCTTATCCTTTACTTGTTCCTGGAACTTCCTATTGGAAAGCAATCAAGGCAAGGAAGGTTCTAAATGAGAGCATAGGGAGGTTAATAAAAAGAAGAAAGGGAAGTGGGAGGATTGGTGGAGGGTTATTGGGAGAACTGCTGGAAGCAAAACTCTCAGATTCTCAGGTTTCTGATAATCTCATTGGTGTTATCTTCGCTGCACATGACACCACAGCAACTGCTCTAACTTGGCTTCTCAAATACTTGCACGACAATCCCAATCTCTTGGAAGCTGTCACAAAAGAACATGAAGGAATCAAAAGCAAAAGAGGTGAAGAAAATAATCGTGGACTTTGTTGGGATGATACGAGGCAGATGGCACTGAGTAACCGGGTAATCCAAGAAACGCTGAGAAGTGCAAGCATATTGTCATTCACATTCAGAGAAGCGGTGAAAGATGTTGAGATTCAAGGTTACCACATTCCCAAAGGTTGGAAGGTGCTTCCACTCTTCAGAAGCATTCATCATTCTCCTGATTTCTTCCCTCAACCACACAAATTTGACCCTTCACGCTTCCAGGTTCCACCGAGACCAAACACATACATGCCATTTGGAAATGGAATCCATTCTTGTCCAGGGAATGAGCTAGCCAAGCTTGAGCTTATTGTCCTCCTTCATCATCTCACTATTTCCTATAGGTGGCAAGTTGTGGGAAACAATGGTGATGGAATAGAGTATGGTCCTTTTCCAGTGCCCAAACATGGCTTACCAGTCAAGATTACCCGCAGAAGCAACGTATTTACCTAA 1290 0.445 MGWPFLGETFKLYTQNPNSFFSNRQKRYGEIFKTHILGCPCVMISEPEAARVVLVSQAHLFKATYPPSKEKLIGPQAVFFQQGSYHSMLKKLVHNSFLPSKIKDSVSQVERILLNFLPTWTNKNINTLQEMKKYAFQVAAMSAFGETMEVMEMEEISKLYRCLEKGYNSYPLLVPGTSYWKAIKARKVLNESIGRLIKRRKGSGRIGGGLLGELLEAKLSDSQVSDNLIGVIFAAHDTTATALTWLLKYLHDNPNLLEAVTKEHEGIKSKRGEENNRGLCWDDTRQMALSNRVIQETLRSASILSFTFREAVKDVEIQGYHIPKGWKVLPLFRSIHHSPDFFPQPHKFDPSRFQVPPRPNTYMPFGNGIHSCPGNELAKLELIVLLHHLTISYRWQVVGNNGDGIEYGPFPVPKHGLPVKITRRSNVFT 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271913g00008 429 CDD CYP90-like 24 423 - -
Stsc271913g00008 429 Gene3D Cytochrome P450 1 424 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271913g00008 429 PRINTS E-class P450 group I signature 25 44 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271913g00008 429 PRINTS E-class P450 group I signature 291 309 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271913g00008 429 PRINTS E-class P450 group I signature 223 240 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271913g00008 429 PRINTS E-class P450 group I signature 243 269 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271913g00008 429 PRINTS E-class P450 group I signature 362 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271913g00008 429 PRINTS E-class P450 group I signature 372 395 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271913g00008 429 PRINTS E-class P450 group I signature 331 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271913g00008 429 FunFam Abscisic acid 8 1 423 - -
Stsc271913g00008 429 SUPERFAMILY Cytochrome P450 2 424 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271913g00008 429 PANTHER CYTOCHROME P450 26 1 413 - -
Stsc271913g00008 429 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 365 374 IPR017972 GO:0005506|GO:0016705
Stsc271913g00008 429 PRINTS P450 superfamily signature 292 303 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271913g00008 429 PRINTS P450 superfamily signature 363 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271913g00008 429 PRINTS P450 superfamily signature 234 251 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271913g00008 429 PRINTS P450 superfamily signature 372 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271913g00008 429 Pfam Cytochrome P450 3 398 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271913g00008 Stsc-Chr271913 44310 48695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271913g00008 1 419 Cytochrome P450 AT4G19230 55.819 4.45e-177 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271913g00008 K09843 - gmx:100782541 685.256