Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271913g00006 ATGACGATTGTGAGCACCGTACCTAAGACTGAGAGAAAGAAGTCAAGGAAGAACAAGGCAATAGTTAATGAGAATGCTCCCTTGTTGCCTAAGAGTCAAGAGAGTGATGCTGGGTTTGATGATTTCAATGGAGCTTCATTCTCTGGAGCAGTTTTCAACTTGTCGACAACAATCATTGGTGCTGGGATCATGGCCTTGCCTGCAACCTTGAGGGAGTTGGGGATGTTGCCTGGCCTCGCCTTCATAGTCTTCATGGCTTTGTTGACTGAGAAGTCAATTGAGTTCTTGATCAGGTTCACCAGGGCAGGGAAAGCTGTTTCCTATGGTGGCCTCATGGGGGATTCATTTGGGAAATATGGGAGAGCACTTGTGCAGCTATGTGTCATAATCAATAACATTGGTGTGCTCATTGTTTACATGATCATAATTGGAGACGTACTGTCTGGAACATCTGCAAGTGGAGACCATCATTCTGGTATCCTTGAAGGATGGTTTGGTGTGCATTGGTGGACCGGCAGGACATTTATTGTCCTCTTTACAACGCTGGCTATATTTCTTCCACTCGCTAGCTTTAAACGAATTGATTCCTTGAGATTCACATCTGCACTCTCTGTTGCACTCGCGGTTGTTTTCCTTGTGATTGCTGTTGGAATCTCAGTGGTGAAGATTATTAGCGGGGGCATTGTCATGCCAAAACTCTTCCCAGTGATTTCTGATGTGACATCTTTCTTTAATCTGTNNNNNNNNNNAGTGTTTGTGACTGCCTATATCTGCCACTACAATGTTCACAGCATAGATAATGAACTTGAGGACTCCTCACAAATGCAAGGGGTTGTACGCACTGCCCTTGGTCTATGCTCTTCGGTGTACTTAATGATAAGCTTCTTTGGGTATCTCCTATTTGGAGAAGGAACTCTTGATGACGTGCTTGCCAATTTCGACACCAACCTTGGAATCCCTTTCAGTTCCGTCCTCAATGATGCTGTCCGTTTAAGCTACGCTGCACACCTCATGCTTGTATTTCCAGTTGTTTTCTATCCATTGCGGCTCAACATAGATGGTCTCCTCTTCCCATCATCAAGGCCCTTAGTTCTGGATAACTTGAGATTTGCAACGCTCACTGTTGGCCTAATTGGTGTGATCTTCCTTGGCGCAAATTGCATACCTAGCATTTGGGATGCTTTCCAGTTCACCGGAGCAACTGCTGCTGTCTGTCTAGGATTTATATTCCCAGCTGCTATCACTCTTAGGGACAGGTACAGCATTGCAACCAAGACAGATAAGATTCTATCTGTGATGATGATAATCCTTGCAGTGTTCTCAAACATTGTGGCCATATACAGTGATGCTTATGCACTGATCAAGCAGAACAAGACTTCTCGTGCGTAA 1389 0.4442 MTIVSTVPKTERKKSRKNKAIVNENAPLLPKSQESDAGFDDFNGASFSGAVFNLSTTIIGAGIMALPATLRELGMLPGLAFIVFMALLTEKSIEFLIRFTRAGKAVSYGGLMGDSFGKYGRALVQLCVIINNIGVLIVYMIIIGDVLSGTSASGDHHSGILEGWFGVHWWTGRTFIVLFTTLAIFLPLASFKRIDSLRFTSALSVALAVVFLVIAVGISVVKIISGGIVMPKLFPVISDVTSFFNLXXXXVFVTAYICHYNVHSIDNELEDSSQMQGVVRTALGLCSSVYLMISFFGYLLFGEGTLDDVLANFDTNLGIPFSSVLNDAVRLSYAAHLMLVFPVVFYPLRLNIDGLLFPSSRPLVLDNLRFATLTVGLIGVIFLGANCIPSIWDAFQFTGATAAVCLGFIFPAAITLRDRYSIATKTDKILSVMMIILAVFSNIVAIYSDAYALIKQNKTSRA 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271913g00006 462 PANTHER AMINO ACID TRANSPORTER 43 441 - -
Stsc271913g00006 462 Pfam Transmembrane amino acid transporter protein 45 448 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271913g00006 Stsc-Chr271913 35738 38999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271913g00006 1 457 Amino Acid or Auxin Permease AAAP Family AT3G30390 67.686 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271913g00006 K14207 - gmx:100796345 762.681