Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271913g00002 ATGGGAAGGGGGAAGATAGAGATAAAGAGGATAGAAAACACTACGACGAGGCAAGTGACTTTCTCAAAGAGAAGGAACGGTCTCCTCAAGAAGACCAATGAGCTCTCTGTCCTCTGTGATGCCCAGATCGGACTCATCATCTTCTCCAACACTGGCAAGCTCTTTCAATACACCTCTCACCCCTTCACCATGGATCAAATCATTCAAAACTATCAACGAGCCACAGGGACTCCCATTCCCATAACGTCCCACGGAGGAGGAGGATATGGAGGACATCACCATAATCAGGAAGGTTTATTGAGTGAGATGGCAATGCTTAGGCGTGAAAATCTGAGGCTTGAGATGGGGATTCAGCGCTACCTTGGAGACGGCATAGCTTCTCTCCAATATGAAGAATTGACTAAGCTTGAACACCAACTTGAAAACTCTCTTTCAAGGCTTCGAAACCGTCACAATGACCTCTTGCAGCAGCATTTGGACAATCTCCGAAGGAAGGAAAGAATCTTGGAAGATCAAAACTGCAGTTTGTCCAATTGGGAGCAGCAAATGGTGGAGTTTGAGAGAAGTAATGGCAATAACAAAGCAGTAACGGATGATCATCATGAGTTGGCATTCTATGAAGATGAGCTAGCTTCAGCTTCAGGCAGCATACTTCAGCTTGGTGCACCACATCCACATCCATATCTTCAGCTTGCACAGCCCAATAATATTCATCATGACTCCCTCACCGGACTGCTCCTGGGCCCCCCTCACCCTCCACCATATAATCAAAATGGGTGA 780 0.4654 MGRGKIEIKRIENTTTRQVTFSKRRNGLLKKTNELSVLCDAQIGLIIFSNTGKLFQYTSHPFTMDQIIQNYQRATGTPIPITSHGGGGYGGHHHNQEGLLSEMAMLRRENLRLEMGIQRYLGDGIASLQYEELTKLEHQLENSLSRLRNRHNDLLQQHLDNLRRKERILEDQNCSLSNWEQQMVEFERSNGNNKAVTDDHHELAFYEDELASASGSILQLGAPHPHPYLQLAQPNNIHHDSLTGLLLGPPHPPPYNQNG 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271913g00002 259 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Stsc271913g00002 259 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 181 - -
Stsc271913g00002 259 ProSiteProfiles K-box domain profile. 96 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc271913g00002 259 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc271913g00002 259 Pfam K-box region 93 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc271913g00002 259 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc271913g00002 259 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc271913g00002 259 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc271913g00002 259 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc271913g00002 259 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Stsc271913g00002 259 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc271913g00002 259 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Stsc271913g00002 259 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc271913g00002 259 MobiDBLite consensus disorder prediction 240 259 - -
Stsc271913g00002 259 Coils Coil 130 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271913g00002 Stsc-Chr271913 14923 16497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271913g00002 1 235 MADS-box Gene Family AT5G23260 42.857 2.71e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc271913g00002 K-box 4.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271913g00002 - - adu:107471830 338.191