Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271911g00019 ATGCAGAAATTGTTTGAAAGATTAGAGCACTTTGCACAAAGAGCACACAACCTTCCACTGCAAATTGGAGTTTCCCGTAGTATTTGGCGGGCAACACCTACAAATTCTGCTGTGGATTATTCTGCTATTTGTGGGAGAGATGATGAAAAACAGAACCTTAAAGAGTATTTGGTATCTGAAGGTGCTCATGGTGGCAGTAAAATAGGAGTGCTTGCCATTGTTGGCATGGGAGGGCTCGGTAAAACGACCCTCGCTAAACTCCTATACAATGATGCTCAAGTTAATGAAAAGTTTGATGTGAAAGCATGGGTGTCTGCTTTTGAAGATTTTGATGTTGTCAAGCTGGCAAAATCTCTTCTTGAATCTATCACATCTGCCGCAATAAATTTTGATAACTCCGACACTTTGCGAGCTGAATTGCAAAAGAACTTGACTGGTAAAAGATTTTTGCTTGTAGTGGATGATATATGGTATGCAAGGTACATTGATTGGACAGATCTGATGCACATTTTGAATGTTGGGCAATTGGGAAGCAAAATTATTGTTACAACACGGCATGAAAGGATTGTGAGTGTTATAAATGCAAGGCAAACCTGCTCCCTAAAACCATTAGTCGATGAAGATTGTTGGGCTTTAATTTCCAAACAGGCTTTTGGAGCACATAAATGCACTGAGCAGTCCAATCTAGAAGAAATTGGAAGAAAAATAGCCAAAAAGTGTGGTGGTTTGCCATTAGCTGCAGTTGCATTGAGTGGTGTTCTTCGCACAAAGTTATCAAAAGATTACTGGAATGAGGTGTTAAATAGCAATATTTGGCATCTGACAAAAGAGGATGTGCAACCTGCTCTCCTATTGAGCTATTATTTTCTTCCCGCTCTTTTGAAACAATGCTTTGCTTATTGTGCAATTTTTCCAAAAAGCTCCAAGCTGCAGAAAGAGAAATTAGTTCAGCTATGGATGGCGCAGGGCTTTATTTATGTGTCCCAAAATGAGAAAAGCATCGAAGAAGTTGGCAGTGAATACTTTGACGAACTAGTAGCAAGATCATTGATACTACGCTCTGCAGATGGGCAACACTTTGAAATGCATGACCTCATCAACGATTTGGCAACAATGGTTTCTTCCCCATATTGTAAGAAATATGACCATGAGATGCCACTTGAAAATCTGAAGAAAATTCGTCATTTATCTTGCAATAAGGAGATGTATAACCATTTTGGTGAACTTGATTCCCTTCATGGATTGAAAGGCTTACGTACACTCCTAGCATTACCTATTGATGACCAGGACCCGGGCTATTACCTAGCGAATCATGAATTGCATGACTTGTTGCTAGCATTGACTCAGTTGCGGACGTTGTCCATGTCAAACTACCGTAACGTCACTGATTTGCCGAATTCTATTGGCAATTTAAAGCATTTGCGATATCTGGATCTATCATACACTGGAATTAAAAAGTTGCCTCCTGAGATATGCAAGCTTTACAATCTACATACCTTGTTGTTGTCTGGTTGTTCAGCTCTTACCGAGTTGCCTGATGAGATGGGGAAGCTGGTGAATCTACGTTGCCTTGATATTGATGGTACTAAATTGCAAGAGATACCCAATGAAATAGCCAAATTAGAAAATCTGCAAACATTGAGTTGTTTTATTGTCAGCAAACAACACAATGGATTGAAGCTTGCAGAAATGAAAAAATTTTCCCATTTACAAAGAAAACTCTGCATCTCTAATCTAGAAAATATTGTTGATCCGTACGATGCTTGTCAAGCCAATTTGAAGGAGAAAAAGCAAATTGAAGAGTTATCTTTGGAATGGAGTGATTCCGTTTTAGAAGTCTCCCAACAAGTTGTACTTGAACGTCTACAACCCTCAACTAACTTGAAGAAATTAATAGTTAAACGCTATGGTGGAACTAGTTTCCCAAATTGGTTGGGTGATTTCTCATTTTGCAACATGATAAGTTTGAGGATCGAAGATTGTCGTCATTGTTCTTCACTACCACCTCTTGGACGACTACATAGTCTAAAAGAACTCTTCATTTCAAGATTGACATCAATGAAGACTATTGGGTGTGAATTTTATGGAAGCAATTCCCCTTCGTTCCAGCCATTTCCCTCTTTAGAGACTTTAAGCTTTGAGTCGATGCCAGAATGGGAAGAATGGAACATGATAGGTGGTATAACTACAGAGTTTCCACGTCTATCAAAACTTTATCTCAAAAGATGTCCTAAACTCAAAGGAAATTTGCCTAGCAATCTTCCTTGCTTAACTAGACTTGAAGTAGGCGATTGTTCTCTACTTGGATCACAATTTTCAGGTGGAGAGGATGACAGAAACATGATGACACCATCAAATCTATTCAGCAAATTTATTCTTCATTTCAACTTTGTTCAAGAATTGCTTATCAAAGGAATTCCTTCTCTAACGTCCTTCCCCAACAATGGTCTCCCCAAAATGTTAATGAAACTTTGGCTTATTGACTGTGAGAACCTTGAATTCCCAACACATGAATTCCTTCGGGGTTGCAATGCACTTGAGGTTCTGATAATAAACAATAGTTGCTGCTCGCTGACATCGCTTCCCTTAGGTTCTCTCCCTGTACTCAAGGATCTTCAGATTGAGAGATGTAAAAATCTGAAATCAATTTCAATTTTGGAAGAAGAAGAAGCAAGTCAATCTCTCATGTTTCTTGAATCTCTTCGCGCATATGATTGTCCTGAACTGGAGTCGATTTCCCTACTTGAGTTGTCCGTTCCCAACATGCATTCCTTTGCGGTAGAGGGATGCAACAAGATTAATTCATTACCAGAACACATTAATAATCTCAGTAGCCTCCAAGCATTATGGATGCGTGATCTTCCGAATTTGGAATCCTTTGCAGAAGAGGGTTTGCCGATCAATTTAAGGAGACTAGGTGTGGGCAATGATGAGGGGGTTTACTCCAATACACCAATCACCAAGTGGGGCTTGGAACGACTCACATCTCTCTCATTTTTGCATATTAGAGGTGACTATATGGTTAAGAAGCTGATGGAAATACAAGTGCCCCTGTTGCCCAACTCTCTTGAGACACTAGTCATAAAAGATGCAGGTGAAATGCAACATTTGGATGGGAAGTGGCTTCAACATCTCACCTCTCTCAAACTTCTTTCATTGCTAGAATGTGACAAGCTCAGGTCATTGCCAGAAGAAGGGTTGCCTTCCTCAATATCACATCTAGAAATGAAGGGATGCCCAATGTTAAAAGCAAGTTATCAGAGAAAGAAAGGAAAAGACTGGCCCAAGATTGCTCACATCCCACTCATAATCTCTGATTGGCGGCTAGCCGCCGGTTACTGTGCGGTACTATTTGCACAGTAA 3363 0.3988 MQKLFERLEHFAQRAHNLPLQIGVSRSIWRATPTNSAVDYSAICGRDDEKQNLKEYLVSEGAHGGSKIGVLAIVGMGGLGKTTLAKLLYNDAQVNEKFDVKAWVSAFEDFDVVKLAKSLLESITSAAINFDNSDTLRAELQKNLTGKRFLLVVDDIWYARYIDWTDLMHILNVGQLGSKIIVTTRHERIVSVINARQTCSLKPLVDEDCWALISKQAFGAHKCTEQSNLEEIGRKIAKKCGGLPLAAVALSGVLRTKLSKDYWNEVLNSNIWHLTKEDVQPALLLSYYFLPALLKQCFAYCAIFPKSSKLQKEKLVQLWMAQGFIYVSQNEKSIEEVGSEYFDELVARSLILRSADGQHFEMHDLINDLATMVSSPYCKKYDHEMPLENLKKIRHLSCNKEMYNHFGELDSLHGLKGLRTLLALPIDDQDPGYYLANHELHDLLLALTQLRTLSMSNYRNVTDLPNSIGNLKHLRYLDLSYTGIKKLPPEICKLYNLHTLLLSGCSALTELPDEMGKLVNLRCLDIDGTKLQEIPNEIAKLENLQTLSCFIVSKQHNGLKLAEMKKFSHLQRKLCISNLENIVDPYDACQANLKEKKQIEELSLEWSDSVLEVSQQVVLERLQPSTNLKKLIVKRYGGTSFPNWLGDFSFCNMISLRIEDCRHCSSLPPLGRLHSLKELFISRLTSMKTIGCEFYGSNSPSFQPFPSLETLSFESMPEWEEWNMIGGITTEFPRLSKLYLKRCPKLKGNLPSNLPCLTRLEVGDCSLLGSQFSGGEDDRNMMTPSNLFSKFILHFNFVQELLIKGIPSLTSFPNNGLPKMLMKLWLIDCENLEFPTHEFLRGCNALEVLIINNSCCSLTSLPLGSLPVLKDLQIERCKNLKSISILEEEEASQSLMFLESLRAYDCPELESISLLELSVPNMHSFAVEGCNKINSLPEHINNLSSLQALWMRDLPNLESFAEEGLPINLRRLGVGNDEGVYSNTPITKWGLERLTSLSFLHIRGDYMVKKLMEIQVPLLPNSLETLVIKDAGEMQHLDGKWLQHLTSLKLLSLLECDKLRSLPEEGLPSSISHLEMKGCPMLKASYQRKKGKDWPKIAHIPLIISDWRLAAGYCAVLFAQ 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271911g00019 1120 SUPERFAMILY L domain-like 362 769 - -
Stsc271911g00019 1120 SUPERFAMILY L domain-like 790 1098 - -
Stsc271911g00019 1120 Gene3D - 204 285 IPR042197 -
Stsc271911g00019 1120 Gene3D Ribonuclease Inhibitor 432 775 IPR032675 -
Stsc271911g00019 1120 PANTHER DISEASE RESISTANCE PROTEIN RP 49 877 IPR044974 GO:0006952
Stsc271911g00019 1120 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 301 IPR027417 -
Stsc271911g00019 1120 SMART LRR_typ_2 471 494 IPR003591 -
Stsc271911g00019 1120 SMART LRR_typ_2 518 541 IPR003591 -
Stsc271911g00019 1120 Gene3D - 31 199 IPR027417 -
Stsc271911g00019 1120 FunFam Probable disease resistance protein At1g63360 287 372 - -
Stsc271911g00019 1120 Gene3D Ribonuclease Inhibitor 803 1100 IPR032675 -
Stsc271911g00019 1120 Gene3D - 286 372 IPR036388 -
Stsc271911g00019 1120 PRINTS Disease resistance protein signature 492 508 - -
Stsc271911g00019 1120 PRINTS Disease resistance protein signature 143 157 - -
Stsc271911g00019 1120 PRINTS Disease resistance protein signature 70 85 - -
Stsc271911g00019 1120 PRINTS Disease resistance protein signature 240 254 - -
Stsc271911g00019 1120 Pfam NB-ARC domain 50 268 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271911g00019 Stsc-Chr271911 115718 120616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271911g00019 68 690 WRKY Transcription Factor Family AT5G45050 24.438 1.35e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271911g00019 - - ahf:112719656 1522.68