Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271911g00018 ATGGCTGCTGCTGTTGTGGGAGAAGCATTGCTCTCATTTGCTGTGCAAACTTTAGTGGGCAAGATCTCCACTGAGATATCAGAGTTCTACCGGAGCAAGAATCTTGATGAATCTTTGCTGGAGAAGCTGAAATTGACTCTGCTAAGCCTTCATGCTTTTCTGGATGATGCTGAGGAGAAGCAGATCAAGAATGCTGCTGTTAAGGCATGGCTTGATGAGCTGACTCAAGCTCTCTTTGATGCTGATGACTTGATCGATGACATAGCCACCGAGGCTCTCCGTAGCAGAGTGGAAGCTAACTATCATCATCGTCAAACTGTAACAGCTAAGGTGCGGAAGGCCCTTTCCTCTCCTTTCAAGCGACCTTACAAAGAGATCAATTCACATATGCAGAAAATGTTTGAAAGATTAGAGCACTTTGCCCAGAGAGCACTCAACCTTCCACTGGAAAGAGGTGTTTCCCGTAGTGTTTGGCGTGCAACACCAACAAATGCTGCTGTGGATGATTCTGCTATTTGTGGGAGAGGTCATGAAAAACAGGACCTTAAAGACTATTTGCTGTCTGAAGGTGCTGATGATGACAGTAAGATAGGAGTGCTTGCCATTGTTGGCATGGGAGGGCTCGGGAAAACAACCCTCGCTAAACTTCTATTCAATGATGCTCAAGTAACAGAAAAGTTTGAAGTGAAAGCATGGGCATCTGTCTCGAAAGATTTTGATGTTGTCAAGCTGGCAAATTCTCTTCTTGAATCTGTCACATCTACTAAAACAAATTTTGATAACTTCGATACTTTGCGAGAAGAATTGCAAAAGAACTTGTCTGATAAAAGGTTTTTGCTTGTATTGGATGATATATGGAATGCAGGGTATGTTGATTGGACCAATCTGATGCACATATTTAATGTTGGGCAACTGGGAAGCAAAATCATTGTTACAACACGACATGAAAGAGTTGTGAGTGTTGTAAAAGCTAGCAAGACCTGCCCTCTAAAACCACTAGTCAATGAAGACTGTTGGGTTTTAATTTCCAAACATGCATTTGGAGCACGTAAATGCACCGTGGAGTCCAACCTAGAAGAAACAGGAAGAAAAATTGCCGAAAAGTGTGGTGGCTTACCATTAGCTGCAGTTTCATTGGGCGGTCTTCTTGGCGCCGAGTTGTCAAACGGTTATTGGAATAAAGTGCTAAACAGCAGCATTTGGCATTTGACAGCGGAGGACGTGCAACCAGCTTTGCTGTTGAGCTATCATTTCCTTCCAGCTTCTTTGAAGCAATGCTTTGCTTATTGTGCAATTTTTCCAAAAAATGCAAAGCTGCAAAAAGAGAAGTTAGTTCAGCTATGGATGGCACAGGGTTTTCTTTGTGTGTACCAAAATGAGAAAGCTATTGAAGAAGTAGGGGGTAGATACTTTGATGAACTAGTAGCAAGGTCATTGATACAACGTTCTGCAGATGGTAAACACTTCGAAATGCATGATCTCATCAATGAATTGGCAACAATGATTTCTTCTTTATACTGTTGGAGGTACGAGGACCAAAAGTCAGGTAAACATCTAAACAAAATTCGTCATTTATCTTACAATAAAAGGATGTTTAACCATTTTGGTGAACTTAATTCCCTTTCTGAATTGAAAGGCTTACGTACACTCCTAGCATTCCCATTACACCTTAATTCCTCGTACAACTCCTATTACCTAGTAGATGGGGTATTGCATAAAATTTTGCCAGCATTGAAACATTTGCGGGTGTTATCTTTGTCGGGCTACGATAATATTACTGTTTTGCCCAATTCTATTGGCTATTTAAAACATTTGCGACATCTAGATCTAGCTTTCACTGGAATTGAAAGGTTGCCTCCTGCAGTATGCAAGCTCTACAATTTGCAGACCTTATTGCTGTCTAATTGTAAGAATCTCATTGAGTTGCCTCAAGAGATGAGAAAGTTGGTGAATCTACGACGTCTTGATATTGACAATACTGGATTGCAGGAGATGCCAGTAGAAATAGCCAAACTGGAAAATTTGCAAAGTTTGTCTCATTTTATTGTCAGGAAACAACACAGTGGATTGAAGCTGGCAGAAATGAGAAGATTTCCCAATTTACAAGGGAAACTCTGCATCTCAAAACTAGAGAACGTTATTAATCCTTATGATGCTTGTCAAGCCAACTTGAAGGAGAAAAGGCAAATTGAAGAGTTATGCCTAGAATGGAGTGATTCTATTTTGGAAGACAACCAACAAGTTGTACTTGAACTTTTGCAGCCCTCAACAAATTTGAAGAAACTGGTTGTTAAACGATTTGGTGGGACTAATTTTCCAAATTGGTTGGGTGATTTATCATTTGGTAACATAGTGATTTTGAGCATTGTAGATTGTCATCATTGTTCTTCACTGCCATCTCTTGGGCAACTACATGGTCTAAAAGAACTCTACATTACAGGTTTGACCTCAGTGAAAGTTATTGGTTCTGAATTTTTCGGAAGCAATTCCCCTTCAATCCAACCGTTTCCCTCCTTGGAGACTTTGATGTTTTGGTCAATGTTAGAGTGGGAAGAATGGAAGTTGATAGATGGTATAACTACTGAATTTCCCCGTCTATCAAACCTATATTTGACGAATTGTCCCAAACTCAAAGGGAATTTACCAAGCAATCTTCCTTGCTTAATCACGCTTTATGTATCGGGGTGTTCTCTACTTGAATCAGAAGTGGATGGCAGAAACATCACGAGACCATTCAGACTGTTCAGTGAGTTTATTGTCCATTTCAACTTTCTTCAACAACTAATTGTCAGTGGAATTCCTTCTTTAACATCCTTCCCCAACAATGGTATGCCCAAAGCTTTAAAGTCACTTGTTATCGATTGTTGTGTGAACCTTGAATTCCAACCTCATGAGTTCCTTCGTAGTTGCAAGACACTTGAGAATCTGAAAATATGGAATAGCTGCCGTTCACTCACGTGGTTTCCCTTAGGTTCCCTCCCTGTGCTTAAGAATCTTACGATAGGGAATTGTAAAAATTTGAAATCAATTTCAATTTTGGAAGAAGCTGAAGCAAGCCAGTCTCTCACGTTTCTTGAATCTCTCAAGATATTTGATTGTCCTGAATTGGAGTCAATTTCCCTGCTTGAATTGTCCACTCCTAACCTGCGTTATTTTTCGGTAGTAAGGTGTGACAAGATTAATTCATTACCAGAACCACTTAATAATCTCACCAACCTTCAAGATCTACATATCTGGGAGGTTCCGAAATTGGAATCCATTGCAGAAGAGGGTTTGCCTATCAATTTAAAGTCACTGGATATCGGCAATGCAAGAGGGGTTTATTCCAATACAGCAATCACCAAATGGGGGTTCGACCGACTCACTTCTCTTGCACAGTTGTCTATTACAGGTGACTATATGCTTAAGAAGCTGACGGAAATGGAAGTGCCCTTGTTGCCCAATTCTCTTCGGACCCTATGTATCATTGATGCATATGAAATACAACATTTGGATGGGAGGTGGCTTCAGCATCTCACCTCTTTCAAAAACCTTCTTCTTGATAATTGTTACAAGTTGGAGTCATTGCCAAAAGAAGGACTGCCTTCCTCAATTTCATTTCTAGATATTCGTCGATGCCCAATGTTAGAAGCAAGTTGTAGGAGAAATGAAGGCAAAGAGTGGCCGAAGATTGCCCACATCTCAGTCATAACTGTTGGGTGGCATTGGAATAGATTAATAGATGGATACTGA 3732 0.4041 MAAAVVGEALLSFAVQTLVGKISTEISEFYRSKNLDESLLEKLKLTLLSLHAFLDDAEEKQIKNAAVKAWLDELTQALFDADDLIDDIATEALRSRVEANYHHRQTVTAKVRKALSSPFKRPYKEINSHMQKMFERLEHFAQRALNLPLERGVSRSVWRATPTNAAVDDSAICGRGHEKQDLKDYLLSEGADDDSKIGVLAIVGMGGLGKTTLAKLLFNDAQVTEKFEVKAWASVSKDFDVVKLANSLLESVTSTKTNFDNFDTLREELQKNLSDKRFLLVLDDIWNAGYVDWTNLMHIFNVGQLGSKIIVTTRHERVVSVVKASKTCPLKPLVNEDCWVLISKHAFGARKCTVESNLEETGRKIAEKCGGLPLAAVSLGGLLGAELSNGYWNKVLNSSIWHLTAEDVQPALLLSYHFLPASLKQCFAYCAIFPKNAKLQKEKLVQLWMAQGFLCVYQNEKAIEEVGGRYFDELVARSLIQRSADGKHFEMHDLINELATMISSLYCWRYEDQKSGKHLNKIRHLSYNKRMFNHFGELNSLSELKGLRTLLAFPLHLNSSYNSYYLVDGVLHKILPALKHLRVLSLSGYDNITVLPNSIGYLKHLRHLDLAFTGIERLPPAVCKLYNLQTLLLSNCKNLIELPQEMRKLVNLRRLDIDNTGLQEMPVEIAKLENLQSLSHFIVRKQHSGLKLAEMRRFPNLQGKLCISKLENVINPYDACQANLKEKRQIEELCLEWSDSILEDNQQVVLELLQPSTNLKKLVVKRFGGTNFPNWLGDLSFGNIVILSIVDCHHCSSLPSLGQLHGLKELYITGLTSVKVIGSEFFGSNSPSIQPFPSLETLMFWSMLEWEEWKLIDGITTEFPRLSNLYLTNCPKLKGNLPSNLPCLITLYVSGCSLLESEVDGRNITRPFRLFSEFIVHFNFLQQLIVSGIPSLTSFPNNGMPKALKSLVIDCCVNLEFQPHEFLRSCKTLENLKIWNSCRSLTWFPLGSLPVLKNLTIGNCKNLKSISILEEAEASQSLTFLESLKIFDCPELESISLLELSTPNLRYFSVVRCDKINSLPEPLNNLTNLQDLHIWEVPKLESIAEEGLPINLKSLDIGNARGVYSNTAITKWGFDRLTSLAQLSITGDYMLKKLTEMEVPLLPNSLRTLCIIDAYEIQHLDGRWLQHLTSFKNLLLDNCYKLESLPKEGLPSSISFLDIRRCPMLEASCRRNEGKEWPKIAHISVITVGWHWNRLIDGY 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271911g00018 1243 Gene3D Ribonuclease Inhibitor 552 906 IPR032675 -
Stsc271911g00018 1243 FunFam Probable disease resistance protein At1g61300 159 327 - -
Stsc271911g00018 1243 PANTHER DISEASE RESISTANCE PROTEIN RP 40 850 IPR044974 GO:0006952
Stsc271911g00018 1243 FunFam Probable disease resistance protein At1g63360 416 501 - -
Stsc271911g00018 1243 Pfam NB-ARC domain 192 397 IPR002182 GO:0043531
Stsc271911g00018 1243 PRINTS Disease resistance protein signature 623 639 - -
Stsc271911g00018 1243 PRINTS Disease resistance protein signature 369 383 - -
Stsc271911g00018 1243 PRINTS Disease resistance protein signature 199 214 - -
Stsc271911g00018 1243 PRINTS Disease resistance protein signature 272 286 - -
Stsc271911g00018 1243 Gene3D - 160 328 IPR027417 -
Stsc271911g00018 1243 Gene3D Ribonuclease Inhibitor 1046 1217 IPR032675 -
Stsc271911g00018 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 430 IPR027417 -
Stsc271911g00018 1243 Gene3D Ribonuclease Inhibitor 907 1045 IPR032675 -
Stsc271911g00018 1243 SMART LRR_typ_2 602 625 IPR003591 -
Stsc271911g00018 1243 SMART LRR_typ_2 649 672 IPR003591 -
Stsc271911g00018 1243 SUPERFAMILY L domain-like 491 900 - -
Stsc271911g00018 1243 Pfam Rx N-terminal domain 11 102 IPR041118 -
Stsc271911g00018 1243 Gene3D - 13 137 - -
Stsc271911g00018 1243 SUPERFAMILY L domain-like 916 1225 - -
Stsc271911g00018 1243 Gene3D - 415 501 IPR036388 -
Stsc271911g00018 1243 Gene3D - 333 414 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271911g00018 Stsc-Chr271911 103750 107849 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271911g00018 197 821 WRKY Transcription Factor Family AT5G45050 23.547 4.70e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271911g00018 - - ahf:112719656 1486.09