Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271911g00009 ATGGCTACTACCAAGTTCAGACATGTCTTTGGTAGATTATGGGGTTTTGCTACTTCTTGTAAGAAAAGAACCACCAGCAGCAGCAACTCAATTGGCACAAGAATTCTCCAAAGGGATGTGGAAAAGGAAGAGTTTCAGTTTGCTAGTACACTCTGCCTCTCATCATACTATAGTGTCTTTGTGGTTCGCCTTGCAATCATGGTTATGCTAGCTATCTTGATTGGTCTTCTTACAATACTAACATGGCATTTCACAAAGATTTATACAACAAAATCTCTTAATAGCTTAGCCTATGACTTGCGTTACGAGCTTCTACAACGCCCAATCTTGAGGATGTGGAACATTTTGAACTCTACTTCTGAGATTACTATAGCTCAGGTCAAGCTTTCTCAGTATGTGATTAGAAGCCATGGAAATCTTACCACTCAAGAAGACCAAGTTGAGATGTATGAAGCAATGAGAGCAGTAACATGGGCACTTTTTGCTAGTAGAAAAGCTCTTAATTCAATCACTGTGAAATACAATAATGGTTTTGTTCAAGCATTCCATAGAGACATTAAAGACAACAACACATTCTACATTTACTCTGATCTTGCAAATTATTCTATTGGTGCAAGTGGCTATAACAGTGAGCTTAATTATTCATCACTTTCCTCACAAGAATCTTCTTGGAATGATAATGACAACAAGTCTACAGTTTGGTATCGCCAGCCGTTGGATCCTGTCACCGGCGAAAAGATCGAAAAAGCAATGCAGATTGCACCAGAAGACTCAATCCACATAGCAGGCCTATCCCAAGTGCCTGATGGGGTGGCATCATGGCGAGTCGCCGTGAGCAAGTTCACAGATTCGCCATTACTTTCAGCTGCATTGCCAGTTTGGGATTCTTCTAACAAGAGCATTGTGGCTGTGGTGGGAGTAACAACTGCACTTTATAGTGTAGGACAGTTGATGAAGGAGCTTGTTGAGTTGCATAGCGGCCATATGTATTTGACTTCTCTAGAAGGCTACTTGCTTGCAACTTCCACTGATGCACCTCTTCTCGATAATTCGACACAGCCACCAAAGCTTAAGATGGCTGTAGATTGTGAAAATGAAGTTATAAGACTTGGAGCTGAGTATTTGAGGAGAAGTTCTGGTAACAAATTCCCTCCAAGCCACGAGGTTCATGTCGCGAATGTCAGGCTAGGCCACGACCGATATTACATAGATTCGTTCTTCCTAAACTTGAAGAGACTTCCTCTGGTTGGTGTGATAATCATACCAAGGAAGCATATATTGGGACAAGTAGATGAAAGAGCCTTCAAGACTTTGGTGATTCTGATATCTGCATCAATGTGTATTATAGTCATTGGATGGGTTTGCATTTTGATTTTGACAAATGGAGTCTCAAAGGAAATGAAATTGAGAGCAGAACTTATTAGTCAGCTTGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTATAAGAGTCAATTTCTTGCAAACATGAGTCATGAACTTAGGACACCTATGGCTGCAATAATTGGATTACTCGACATTCTTATGTCCGACGACTGTCTAACAAATGAGCAGTGTGCAACGGTTACTCAGATAAGAAAATGCTCGACTGCACTGCTTCGGCTTCTTAATAACATCTTGGATATCAGCAAGGTGGAATCAGGAAAGCTAGTTCTAGAAGATGCTGAATTCGATTTGGGAAGGGAACTCGAAGGGCTTGTGGATATGTTTTCTGTGCAATGCATCAATCACAGTGTAGAGACTGTCTTAGACCTATCTGATGATATGCCGAAGCTAGTTCGTGGCGACTCTGCTAGAGTAGTCCAAATTTTCGCGAATTTGATCAACAACTCAATTAAATTTACTCCTTCTGGACATGTTATTCTGAGAGGATGGTTTGAAAATCCAAATCCTTGCAGTGATAATGCAAATTTTCTGATGGAAGAGAAGAAACTACAGTATGCACAAAAGACTATTAGAGCAAAGCAACATGAGAATCATGCAAAGAGAACATCTGAGAGGGATAAAAAAGCAGTCTTATGGTTTGAAGTCGATGACACCGGCTGCGGTATTGATCCAAGTAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCAGATCCATCAACTACAAGGCTGCATGGAGGCACTGGCCTTGGTCTTTGCATTGTCAGAAGCTTGGTAAATAAGATGGGTGGAGAAATCAAAGTTGTCAAAAAGGAAGGCCCCGGAACACTGATGCGATTATACCTGCGTCTCGATACAGCCGGGGATGCCACAGAACAACATTGTTTAGTAGATATCGCAAACAATGGCTTAGTGGTATTGCTTGCACTGCACGGCAACATGGGAAGATCAATCACATCAAAGTGGCTGCAGAAAAATGGGGTGTTCACAATGGAGGCATCTGAATGGAATGGATTAACACAGATTCTTAGGGAACTCTTTCATGCAAGAAGCTCAGCAGGAATTAACAATGGCTTTGATGTACATTATCCAATTCCAGAGAGTTTGAAGTCCAGATTACTTAGCATACAAGAAATCAGGAATCCGGTTTTTGTCATCGCGGTGGACATAGGACTACTCGACTTGAGCACAGATATATGGAAGGAACAGCTTAACTTTCTTCACCGATACTTGGGGTTAGCGAAGTTTATATGGGTGCTAAACCATGACACCTCCAACACCATTAAATTGGAGCTTAGAAGAAAAGGACATATGATGACAGTTAACAAACCACTTTACAAAGCAAAAATTGTTCACATTTTGGAGGAAGTTATAAAAGAGAGAAATCATGAGATGCAGAAGAAGAACATGGATGAGCTTCATGAGAGTGATTATACTCATTGTGATGCTGCTAGCTCAGACGATTCTGACATATCCGAATCTGCTCCTTGTAATCCTGTTAGTAGTACTGAGAAGTTTGAGCAGTTTGATTTATTATCTCGGTATAGGATAAACAACTGCTTAATAGGATTAACCGATGAACATTCGGAAGTTAAGACTCCAAGGAAGGAGGATTCATGTCAAAATAACCACAACTCTCCAAAATCAATGTCTGCAGAACAAGCATATTTTCCAAGAGAAGCTCATCAAGGCGAAGATTCTGAAAGAAGAGGCAAAGAAGAGCATAGGATCATCGGCGGCTTGGCTAGACCGGCAAACGGAAAGAAATCCCTTGAAGGGTTAAGGATATTGCTTGCAGAAGACACACCTGTGATTCAAAGGGTTGCAACCATAATGCTTGAAAAGATGGGAGCAAGTGTTGTAGCTGTTGGTGATGGACAACAAGCAGTGGATGCTTTGAATGGCATGCTTGGTGTTGAAGATTTCAGAAGAGACTCAAACTTGAATGAAAGAAACACAAGATCATCATCACCTCAAACTGAAATTCTCAGTTCCCCTTCATATGACTTGGTCCTAATGGATTGTCAGATGCCAAAGATGGATGGATATGAGGCAACAAAAGCAATAAGGAAATCAGAAGTGGGAAGTGGAGTTCACATTCCAATAGTTGCTCTCACTGCTCATGCAATGTCATGTGATGAAGCCAAGTGCTTAGAAGTTGGAATGGATGCTTATTTAACCAAACCAATTGACTTTAAATTGATGGAATCCACTATTCTTTCACTCACAAGAAGAACAACTTCCTGA 3654 0.41 MATTKFRHVFGRLWGFATSCKKRTTSSSNSIGTRILQRDVEKEEFQFASTLCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTSEITIAQVKLSQYVIRSHGNLTTQEDQVEMYEAMRAVTWALFASRKALNSITVKYNNGFVQAFHRDIKDNNTFYIYSDLANYSIGASGYNSELNYSSLSSQESSWNDNDNKSTVWYRQPLDPVTGEKIEKAMQIAPEDSIHIAGLSQVPDGVASWRVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVELHSGHMYLTSLEGYLLATSTDAPLLDNSTQPPKLKMAVDCENEVIRLGAEYLRRSSGNKFPPSHEVHVANVRLGHDRYYIDSFFLNLKRLPLVGVIIIPRKHILGQVDERAFKTLVILISASMCIIVIGWVCILILTNGVSKEMKLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAIIGLLDILMSDDCLTNEQCATVTQIRKCSTALLRLLNNILDISKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHSVETVLDLSDDMPKLVRGDSARVVQIFANLINNSIKFTPSGHVILRGWFENPNPCSDNANFLMEEKKLQYAQKTIRAKQHENHAKRTSERDKKAVLWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRSLVNKMGGEIKVVKKEGPGTLMRLYLRLDTAGDATEQHCLVDIANNGLVVLLALHGNMGRSITSKWLQKNGVFTMEASEWNGLTQILRELFHARSSAGINNGFDVHYPIPESLKSRLLSIQEIRNPVFVIAVDIGLLDLSTDIWKEQLNFLHRYLGLAKFIWVLNHDTSNTIKLELRRKGHMMTVNKPLYKAKIVHILEEVIKERNHEMQKKNMDELHESDYTHCDAASSDDSDISESAPCNPVSSTEKFEQFDLLSRYRINNCLIGLTDEHSEVKTPRKEDSCQNNHNSPKSMSAEQAYFPREAHQGEDSERRGKEEHRIIGGLARPANGKKSLEGLRILLAEDTPVIQRVATIMLEKMGASVVAVGDGQQAVDALNGMLGVEDFRRDSNLNERNTRSSSPQTEILSSPSYDLVLMDCQMPKMDGYEATKAIRKSEVGSGVHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTRRTTS 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271911g00009 1217 PANTHER TWO-COMPONENT HISTIDINE KINASE 47 759 - -
Stsc271911g00009 1217 Gene3D - 554 758 IPR036890 -
Stsc271911g00009 1217 Pfam Response regulator receiver domain 1128 1205 IPR001789 GO:0000160
Stsc271911g00009 1217 SUPERFAMILY CheY-like 1061 1214 IPR011006 -
Stsc271911g00009 1217 ProSiteProfiles Response regulatory domain profile. 1064 1212 IPR001789 GO:0000160
Stsc271911g00009 1217 Pfam His Kinase A (phospho-acceptor) domain 490 555 IPR003661 GO:0000155|GO:0007165
Stsc271911g00009 1217 Gene3D - 1050 1211 - -
Stsc271911g00009 1217 MobiDBLite consensus disorder prediction 999 1024 - -
Stsc271911g00009 1217 SMART HisKA_10 489 555 IPR003661 GO:0000155|GO:0007165
Stsc271911g00009 1217 Gene3D - 458 553 - -
Stsc271911g00009 1217 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 544 752 IPR036890 -
Stsc271911g00009 1217 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 477 556 IPR036097 GO:0000155|GO:0007165
Stsc271911g00009 1217 SMART HKATPase_4 602 755 IPR003594 -
Stsc271911g00009 1217 FunFam Histidine kinase 1-like protein 477 556 - -
Stsc271911g00009 1217 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 602 754 IPR003594 -
Stsc271911g00009 1217 PRINTS Bacterial sensor protein C-terminal signature 680 694 IPR004358 GO:0016310|GO:0016772
Stsc271911g00009 1217 PRINTS Bacterial sensor protein C-terminal signature 715 733 IPR004358 GO:0016310|GO:0016772
Stsc271911g00009 1217 PRINTS Bacterial sensor protein C-terminal signature 698 708 IPR004358 GO:0016310|GO:0016772
Stsc271911g00009 1217 PRINTS Bacterial sensor protein C-terminal signature 739 752 IPR004358 GO:0016310|GO:0016772
Stsc271911g00009 1217 MobiDBLite consensus disorder prediction 950 970 - -
Stsc271911g00009 1217 CDD REC_hyHK_CKI1_RcsC-like 1065 1208 - -
Stsc271911g00009 1217 CDD HisKA 490 551 IPR003661 GO:0000155|GO:0007165
Stsc271911g00009 1217 SMART REC_2 1063 1208 IPR001789 GO:0000160
Stsc271911g00009 1217 ProSiteProfiles Histidine kinase domain profile. 496 755 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271911g00009 Stsc-Chr271911 39292 45558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271911g00009 5 1213 Histidine Kinase Gene Family AT2G17820 63.132 0.0 1491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc271911g00009 HATPase_c 1.2e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271911g00009 - - gmx:100801970 1825.83