Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271911g00008 ATGGCTTCTATTGTGGTAGAACCGTTGATCTCGACTGTGGTTGAATTAATGATTGGGAAAATCGCAACTGAGATATGGGAGTTCTATCGGACCAGGAATCTGGACGAGTCACTACTGGAGAAGCTGGAATCGACATTGCTGATCCTTCAAGCTTTTCTGAGTGATGCTGAGGAAAAGCATATCAAGAACGCTGCTGTTAAGGCATGGCTTGATGGGCTCACTCAAGCCCTCTTTGATGCTGATGACTTGCTCGATGAGGTCGCCACTGAGGCTCTCCGTCGCAAGGTGGAAGCTCACCATCTTCCCCATTGTCCCCTCGCTGTCAAGGCGAGGAAGGTCCTTTGCTATCCATTTAAGCGGCCTTATGGAGAGATCAATTCTAAGATGCAGAAATTGGTGGAAAGATTAAAGAGCTTTGTAGATGAAGCACGCACCCTTCCACTGGAGAAAGGTGTCTCCGGCAATTATTGGCATTCAACACCAACAAATTCTGCCGTGGATGATTCTACTATTTGTGGGAGAGACAAGGAAAAACAGAATCTTAAAAAGTGTTTGCTGTCAGAGGATGCTGATGCTGATAGTGGCAGTAAAATAGGAGTGTTTGCCATTGTTGGCATGGGAGGGGTTGGAAAAACCACTCTCGCTAAACTCCTTTACAATGATGCTGAAGTTAAAGAAAAGTTTGATGCGAAAGCATGGGTTTCTGTTACAAAAGATTTTGATGTTGTCAAGTTGACAAAATCTCTTATTGAATCTGTCACATCTAAATCACCAAAAAGTGAAAACTTCGACACTTTGCGAGGAGAATTGCAAAAGAACTTGTCGGGTAAAAAATTTCTGCTCGTGTTGGATGATATATGGAATGCACGATATGTTGATTGGAACAATCTGATGCACATTTTAAATGTTGGGAAAATGGGAAGTAAAATTCTTGTCACAACCCGACATGAAAATGTGGTGGCTGTTGTAAAAGCTATGGAAACCTGTCATCTGGATCCATTGGCCAATGAAGATTGTTGGGCTTTACTTTCAAAGCATGCATTTGGAGCACACAAATCCACTGAAATATCATCCAACCTTGAAGAAATTGGTAAAAAAATCGCTGAAAAGTGTGGTGGATTGCCACTAGCTGTGGTTGCAATCGGGGGACTTCTTAGTACAAAGTTATCAACCGAGCACTGGAGAAAAGTGTTAAACAGCAGCATTTGGCATCTGACGGTAAATGATGTGCAACCATCTCTTCTATTGAGCTATCATTTCCTTCCAGCTTCTTTGAAACAATGCTTTGCTTATTGTGCAATTTTTCCAAAAAAATCAGAGCTGCCAAAAAAGAAGTTAGTTCAGCTATGGATGGCACAAGGCTTTATTAACGTGTCCCAGAATGAGAGAAGCATGGAAGAAGTTGGAGGTGAATACTTTGATGAACTAGTTGCAAGGTCATTGATACAACTGGAAGAGGACCGCTTTGAAATGCATGACCTCATCAACGATCTGGCAACAATGGATAAAGAGATGCTGAACAATTTTGACAAAATTGATTCCATCTATGAATTGAAAGGCTTGCGTACACTCCTAGCATTACCTTGTTTTGACTTTTATGCTGAAAGTTACCTAGCAAACGAGGTATTCAATGAGTTGTTGCTTGCATTGAAGCACTTGCGGGTGTTATCTCTGTCAAACTACAGCAATATCACTGTTTTGCCGAACTCTATTGGTGATTTAAAACATTTACGATATCTAGATCTATCTTCCACTGGAATTAAAAAGCTGCCTCTTGCAATATGCAAGCTCTACAATCTACAGATCTTGCTGTTGACTAATTGTTCGTCTCTTACTGAGTTGCCTGGGGAGATGGAAAAGCTGGTGAATCTACGCTACCTAGATATCTATGGTACTGAATTGGAGGAGATGCCTGTTGGAATAGCCCAATTAAAAAATTTGCAAACCTTGACTCAGTTTATTGTAAGCAAACAACACAATGGATTGAAACTTGCAGAAATGAGAAAATTTCCCAATTTACAGGGAAAATTCTGCATCTCAAAGCTGGAAAATGTCATTCATCCATCTGATGCTTATCAAGCCAATTTGAAGGAGAAAAAACAAATTCAAGAATTGTCATTAGAATGGAGTGAATGTGATCCCATCTTGGAAGACTCCCAATACCTTGTATTTGAACACTTACAGCCCTCCACAATTTTGGAGGAACTGAGTGTTAAATGCTATGGTGGAATTAGTTTTCCAAATTGGTTGGGTGATTCTTCATTTGACAACTTAGTGAGTTTGAGTATTGAAGATTGTTGTAATTGTTCTTCACTGCCACCTCTTGGACAACTTCCGAATCTAGAAGAACTCTCCATTTCAGGTATGACATCAGTGAGGACTATTGGTTCTGAATTTTACGGAACCAATTCTCCTTCCTTCCAACCATTTCCCTCCTTGGAGAGTTTGAGTTTTCAGTCGATGGCGGAATGGGAAGAATGGAAGATGATAGATGGTATAACTACTGAGTTTCCCAATCTATCATACCTACGTCTGAGTAGCTGTCCAAAACTCAAAGGAAATTTACCCACCAATCTTCCTTGCTTAATTCAACTTTCTGTAGAGGATTGTTCACTACTCAGATCACAAACTTCAGCTGAAGTGGATGGCAGAAACAGCATGACACCAACATTCAATCTATTCAGTGAATTTATTCTTCATTTCAATTCTCTTGAAGAATTATTTCTCACTGAAATTCCTTCTCTAACTTCATTCCCCAACAATGGTCTGCCCAAAATGCTAAGTAAACTCTTTATCCAAGATTGCCAGAACCTCGAATTCCCAAGTCATGAATTCCTGAGTGGTTGCAAGGCACTTGAGCATCTGATGATAAAGAGTAGCTGTCGCAGGCTGACGTCATTTCCTTTAGGTTCTCTCCCCGTTCTCAAGCTTCTTCAGCTCGAGGCGTGTAAGAATCTGAAATCAGTTTCGGTTTTGGAAAAAGAAGCAGCAAGCCAGTCTCTCAAGCTTCTAGAATATCTCAGCATAGAGAGATGTCCTAAACTGGAGTCAATTTCCCTGCATGAATTGTGTGCTCCTAATGTAACTTTTTTTCTAGTAACCAAATGCTACAAGATTACCTCATTGCCAGAACCAATTAATAGTCTCCCTGGCCTTCATTCTTTATATCTTTCTAGCCTTCCGAAGTTGCTGTCCTTTGCAAAAGAGGGTTTGCCTATCAATTTAAGGGCACTTGGTTTGGAAAATGTTGAAGGTGTTTACTCCAATACAGATATCACCAAGTGGGGCTTGGAACGACTCACTTCTCTTTTTCATTTCCGTATTAGAGGTGAGTACATGGTTAAGAAGCTGATGGACATGGTAGTGTTGCTGCCGAATTCTGTTGAGATGCTAGAAATAGAAGGTGCAGCTGAAATACAACATTTGGATGGGAAGTGGCTTCAGCATCTGACCTCTCTAAGCCGTCTTTCGTTGGCAGAATGTGACAAGCTCAGGTCATTGCCAGAAGAAGGGTTGCCTTCCTCAATTTTATGCCTAGAAATGAAGGGATGCCCAATGTTAAAAGCAAGTTATCAGAGAAAGAAAGGGAAACACTGGCCCAAGATTGCTCACATCCCAAGCATAATCTCTGATTGGTAA 3639 0.4086 MASIVVEPLISTVVELMIGKIATEIWEFYRTRNLDESLLEKLESTLLILQAFLSDAEEKHIKNAAVKAWLDGLTQALFDADDLLDEVATEALRRKVEAHHLPHCPLAVKARKVLCYPFKRPYGEINSKMQKLVERLKSFVDEARTLPLEKGVSGNYWHSTPTNSAVDDSTICGRDKEKQNLKKCLLSEDADADSGSKIGVFAIVGMGGVGKTTLAKLLYNDAEVKEKFDAKAWVSVTKDFDVVKLTKSLIESVTSKSPKSENFDTLRGELQKNLSGKKFLLVLDDIWNARYVDWNNLMHILNVGKMGSKILVTTRHENVVAVVKAMETCHLDPLANEDCWALLSKHAFGAHKSTEISSNLEEIGKKIAEKCGGLPLAVVAIGGLLSTKLSTEHWRKVLNSSIWHLTVNDVQPSLLLSYHFLPASLKQCFAYCAIFPKKSELPKKKLVQLWMAQGFINVSQNERSMEEVGGEYFDELVARSLIQLEEDRFEMHDLINDLATMDKEMLNNFDKIDSIYELKGLRTLLALPCFDFYAESYLANEVFNELLLALKHLRVLSLSNYSNITVLPNSIGDLKHLRYLDLSSTGIKKLPLAICKLYNLQILLLTNCSSLTELPGEMEKLVNLRYLDIYGTELEEMPVGIAQLKNLQTLTQFIVSKQHNGLKLAEMRKFPNLQGKFCISKLENVIHPSDAYQANLKEKKQIQELSLEWSECDPILEDSQYLVFEHLQPSTILEELSVKCYGGISFPNWLGDSSFDNLVSLSIEDCCNCSSLPPLGQLPNLEELSISGMTSVRTIGSEFYGTNSPSFQPFPSLESLSFQSMAEWEEWKMIDGITTEFPNLSYLRLSSCPKLKGNLPTNLPCLIQLSVEDCSLLRSQTSAEVDGRNSMTPTFNLFSEFILHFNSLEELFLTEIPSLTSFPNNGLPKMLSKLFIQDCQNLEFPSHEFLSGCKALEHLMIKSSCRRLTSFPLGSLPVLKLLQLEACKNLKSVSVLEKEAASQSLKLLEYLSIERCPKLESISLHELCAPNVTFFLVTKCYKITSLPEPINSLPGLHSLYLSSLPKLLSFAKEGLPINLRALGLENVEGVYSNTDITKWGLERLTSLFHFRIRGEYMVKKLMDMVVLLPNSVEMLEIEGAAEIQHLDGKWLQHLTSLSRLSLAECDKLRSLPEEGLPSSILCLEMKGCPMLKASYQRKKGKHWPKIAHIPSIISDW 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271911g00008 1212 Pfam Rx N-terminal domain 13 101 IPR041118 -
Stsc271911g00008 1212 SUPERFAMILY L domain-like 491 872 - -
Stsc271911g00008 1212 PRINTS Disease resistance protein signature 273 287 - -
Stsc271911g00008 1212 PRINTS Disease resistance protein signature 970 986 - -
Stsc271911g00008 1212 PRINTS Disease resistance protein signature 200 215 - -
Stsc271911g00008 1212 PRINTS Disease resistance protein signature 371 385 - -
Stsc271911g00008 1212 FunFam Probable disease resistance protein At1g61300 158 328 - -
Stsc271911g00008 1212 Gene3D Ribonuclease Inhibitor 684 879 IPR032675 -
Stsc271911g00008 1212 Gene3D Ribonuclease Inhibitor 535 683 IPR032675 -
Stsc271911g00008 1212 SUPERFAMILY L domain-like 895 1203 - -
Stsc271911g00008 1212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 432 IPR027417 -
Stsc271911g00008 1212 Gene3D - 334 417 IPR042197 -
Stsc271911g00008 1212 Gene3D Ribonuclease Inhibitor 884 1205 IPR032675 -
Stsc271911g00008 1212 Gene3D - 159 329 IPR027417 -
Stsc271911g00008 1212 Gene3D - 418 501 IPR036388 -
Stsc271911g00008 1212 PANTHER DISEASE RESISTANCE PROTEIN RP 39 870 IPR044974 GO:0006952
Stsc271911g00008 1212 Coils Coil 39 59 - -
Stsc271911g00008 1212 Pfam NB-ARC domain 197 400 IPR002182 GO:0043531
Stsc271911g00008 1212 Gene3D - 11 145 - -
Stsc271911g00008 1212 FunFam Probable disease resistance protein At1g63360 418 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271911g00008 Stsc-Chr271911 32843 38813 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271911g00008 198 795 WRKY Transcription Factor Family AT5G45050 23.318 7.12e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271911g00008 - - ahf:112719656 1473.37