Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271910g00003 ATGACTCCAAATGGTGGAACAGGAACTGAGGAACAACAACAGCAGCAACAACAACAACAACACAAGAGGAAGGTGTTTGATTCTTTGCTCAAATCAAGTGTTCAAAAGTCACCAAGATTGTGCACAACTATTAGGGAAGGTTGGCCAGAAATCTTGGAAAATGAGGATAACAACTTGAGTAGATGTGTTGGTTCTTTAGCTGGATCTGGACCTCCTAGTACTAGTTACTGTTCCATGACAGATTCTGCTCACATTATTGAAGATTTAACTGTAACAACTCAGAATAAGAACCTTAATTTCTACCCTCAGAGGAATCAGTTAGCTATTGAGTCTAGGTATAGTAGCTTGACTAGGGAAATTCTGCCACAAGATGAAGAGCAGATACCATTGAGACTAAGCAAAGGGGTTAACGGAATTGATTCTGAATTTCGGGGCCTGAAATCGTCACTGAGAGTTTCTTCAAATAGAAGCAATGTGGACAAGATCTTTACCTCAAGCAATGGCATTGTTATTAACGGCGCTACTCAGAATACTTCATCAGCATATAGTGTTTCTCATTTGATTTTGAAGCAAACAGTGAAGGGAAAGGGTGTTATCTGCAAGGACTTCGACGGAAGAATTGGTCCGGCAGGAGCAGTACTTATGAGGCAGGAGGAGGATGAGTCTCAATCTGATATGCCGAGACCGGATGCGACCGATAAGATGCCTTCCCTGCAAGTAACTGTAAAGTCCGGCACAGGTTCTTCGAATGATGGGATGAACTTGAGAGAGTGGCTGAGGCCACAAGATCATAAAATAGATAAATCAGGAAGGCTACAAATATTCAAGCAGATCCTGGAATTGGTTGATTTTGCACATTCCCAAGGTGTTGTCATGCTAAACTTAAGACCTTCTTGTTTCACTCTATCACCTTCTTCGAGTAAAATCAAGTACATCGGTTCATCTGGCCGACAAGAGTTGCATAAATTCTTGACTTGCAATGTGAACAAAAGAATGTCTCTAGAACAGGATGCCGGTGCGAACCAAATCTTGAGAATGAAGCAGCAAAATCCCTACCAAGAGACGAGATCTCTTCGGCAGCATCGTCATTTCACTTCCATTCATGGATGCAGGACTACAACGGCGAATCAAACCGGATCTTCTGTAAATGAGTCCACCGAATTGGAAGAGAAGAAATGTATGTCTTTAGTACAATTAGAAGAGAAATGGTATAGTAGTCCGGAAGAGCTAGATGGTGGGGTTTGCACATTTTCTTCAAATATTTATAGCCTTGGAGTTCTTCTTTTCGAGTTGCTGTGCAATATTGAGTCATGGGAGTTGCATTCGTCCGTGATGTCAGATCTATGTCATAGAATCTTACCACCAAGATTTCTGTCAGAAAATCCAAAGGAAGCTGGTTTTTGTCTTTGGCTTCTTCATCCTGATCCGTCTTCTCGCCCCAATACCAGGATGATTTTAGAGTCTCAGTTTATAGTTGAATCCGAGAAATCAAATTCCTCAGATGATGTTCCACCAGTTGGAGTATCAGATGATGATGAAGCCGAAACACAGCAATTACTACATTTTCTAGTCACACTTAAAGATGAAAAGAAAAAACAGGAATCGAAGTTGGTGGAAGAGCTAAGTTGGTTGGATGAAGATATTAAGTTGGTAGAAAGAAGTAATTCGCTCGAGACAGATTCGCTGTTCCCATCGAAACAAGTGAACTATCCTGAATTGACAGGAAGCAGTTATCATTTTCCAGAACATGCCATTTCAAGTGCTAATGAGGCAAGATTCTTGAGTAACATAAATCAGCTAGAGAGTTCTTACTTTTCGATGAGATGCCAAATGCTACTCAAAGATACTTCAGCCGCCGCAAACTATGATAAAGATGTGATTGAAAGTAGATATAGATTACCTCATGCAGAGAATGTTATTAAGGAGCCAAGTAGAATTCAGAGTTCTGCTGGTTCTTTAGGAACCTTCTTTGAAGGTTTATGCAAGTTTGCTCGTTACAGCAAATTTGAAGAACGCGGCACATTGAGGAATAGAGATCTGCTTAGCTCAGCCAATGTGATATGTGCTTTGAGTTTCGACCGTGACGAGGATTACATCTACCCGGTAGTTGAGATGTCGAATAAATCGAAGCTTAGCTGTGTGTGCTGGAACAGCTACATTAAAAATCATCTGGCTTCTACCGATTACGATGGTGTTGTTCAGATGTGGGATGCAGGCACTGGTCAGCCATTGTCTCAATACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCACTTTTCTCTGTCAGATCCTAAAATGTTTGCTAGTGGAAGTGATGACTGCTCTGTCAAACTCTGGAATATCGGCGAGAGAAACTCTGTAGGAACCATATGGAACCCTGCCAATGTATGCTGTGTTCAGTTCTCCAGTTTCTCAACACACCTTTTATTCTTTGGTTCAGCTGATTACAAGGTCTACGGCTATGATCTTCGCCACACTCGAGTCCCTTGGTGCACCTTAGGTGGTCATGGAAAAGCTGTTAGCTATGTAAAATCTGTAGATGCTGAAACAGTTGTTTCTGCTTCCACTGACAACTCTTTGAAGCTATGGGACCTGAAGAAAGCAAGTTCTTCTGGTTTGTCATCTGATGCTTGTGCCTTAACATTCAAAGGTCATAGTAATGAAAAGAATTTTGTAGGTTTATCCGTTACGGATGGATACATTGCATGCGGTTCAGAAACTAATGAGGTATATTGTTATCACAAGTCACTGCCATTGCCAATCACTTCTCACAAATTTGAATCCATCGATCCCGTTTCTGGTCATTCGACTAGCGATGACAATAATGGACAGTTTGTTTCTAGTGTCTGCTGGAGAAAGAAGTCTAACATGCTTGTTGCTGCCAACTCGATCGGAATCGTGAAACTGCTACAGATGGTTTGA 2922 0.4148 MTPNGGTGTEEQQQQQQQQQHKRKVFDSLLKSSVQKSPRLCTTIREGWPEILENEDNNLSRCVGSLAGSGPPSTSYCSMTDSAHIIEDLTVTTQNKNLNFYPQRNQLAIESRYSSLTREILPQDEEQIPLRLSKGVNGIDSEFRGLKSSLRVSSNRSNVDKIFTSSNGIVINGATQNTSSAYSVSHLILKQTVKGKGVICKDFDGRIGPAGAVLMRQEEDESQSDMPRPDATDKMPSLQVTVKSGTGSSNDGMNLREWLRPQDHKIDKSGRLQIFKQILELVDFAHSQGVVMLNLRPSCFTLSPSSSKIKYIGSSGRQELHKFLTCNVNKRMSLEQDAGANQILRMKQQNPYQETRSLRQHRHFTSIHGCRTTTANQTGSSVNESTELEEKKCMSLVQLEEKWYSSPEELDGGVCTFSSNIYSLGVLLFELLCNIESWELHSSVMSDLCHRILPPRFLSENPKEAGFCLWLLHPDPSSRPNTRMILESQFIVESEKSNSSDDVPPVGVSDDDEAETQQLLHFLVTLKDEKKKQESKLVEELSWLDEDIKLVERSNSLETDSLFPSKQVNYPELTGSSYHFPEHAISSANEARFLSNINQLESSYFSMRCQMLLKDTSAAANYDKDVIESRYRLPHAENVIKEPSRIQSSAGSLGTFFEGLCKFARYSKFEERGTLRNRDLLSSANVICALSFDRDEDYIYPVVEMSNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDAGTGQPLSQYMEHQKRAWSVHFSLSDPKMFASGSDDCSVKLWNIGERNSVGTIWNPANVCCVQFSSFSTHLLFFGSADYKVYGYDLRHTRVPWCTLGGHGKAVSYVKSVDAETVVSASTDNSLKLWDLKKASSSGLSSDACALTFKGHSNEKNFVGLSVTDGYIACGSETNEVYCYHKSLPLPITSHKFESIDPVSGHSTSDDNNGQFVSSVCWRKKSNMLVAANSIGIVKLLQMV 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271910g00003 973 PANTHER PROTEIN SPA1-RELATED 2 700 973 IPR044630 GO:0009640
Stsc271910g00003 973 ProSitePatterns Trp-Asp (WD) repeats signature. 851 865 IPR019775 -
Stsc271910g00003 973 Gene3D Transferase(Phosphotransferase) domain 1 251 502 - -
Stsc271910g00003 973 ProSiteProfiles Trp-Asp (WD) repeats profile. 747 789 IPR001680 GO:0005515
Stsc271910g00003 973 SUPERFAMILY WD40 repeat-like 685 969 IPR036322 GO:0005515
Stsc271910g00003 973 SMART serkin_6 181 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271910g00003 973 SMART WD40_4 925 971 IPR001680 GO:0005515
Stsc271910g00003 973 SMART WD40_4 698 737 IPR001680 GO:0005515
Stsc271910g00003 973 SMART WD40_4 826 864 IPR001680 GO:0005515
Stsc271910g00003 973 SMART WD40_4 875 914 IPR001680 GO:0005515
Stsc271910g00003 973 SMART WD40_4 740 780 IPR001680 GO:0005515
Stsc271910g00003 973 SMART WD40_4 783 822 IPR001680 GO:0005515
Stsc271910g00003 973 Pfam WD domain, G-beta repeat 742 780 IPR001680 GO:0005515
Stsc271910g00003 973 Pfam WD domain, G-beta repeat 832 864 IPR001680 GO:0005515
Stsc271910g00003 973 PRINTS G protein beta WD-40 repeat signature 724 738 IPR020472 -
Stsc271910g00003 973 PRINTS G protein beta WD-40 repeat signature 767 781 IPR020472 -
Stsc271910g00003 973 PRINTS G protein beta WD-40 repeat signature 851 865 IPR020472 -
Stsc271910g00003 973 SUPERFAMILY Protein kinase-like (PK-like) 251 490 IPR011009 -
Stsc271910g00003 973 Gene3D - 656 973 IPR015943 GO:0005515
Stsc271910g00003 973 ProSiteProfiles Trp-Asp (WD) repeats profile. 833 873 IPR001680 GO:0005515
Stsc271910g00003 973 MobiDBLite consensus disorder prediction 1 23 - -
Stsc271910g00003 973 MobiDBLite consensus disorder prediction 1 25 - -
Stsc271910g00003 973 ProSiteProfiles Protein kinase domain profile. 156 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271910g00003 Stsc-Chr271910 18118 23818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271910g00003 744 913 Miscellaneous Gene Families AT5G08390 24.561 1.35e-09 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Stsc271910g00003 WD40 0.017 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271910g00003 K16240 - gmx:100802144 1223.38