Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271910g00001 ATGTGGTGCATTTCCACCACCGCCACCACCACCCTCTTCTTCCTCCTCCTCTTCTCGGAGTTATCTTACTCCCAACTCCACCACCACCACCACCACCACCATAGGAGGATCCTCCACCAACCTCTTCTTCCACAACCACAAAACTCATCCCCCACTAATATCTCACCACCACCATCACCATCACCATCACCATCACCGCCACCTTCTCCAAAGCCGAAGTTCCCATTTTCAACAACACCCACTTCTCAAAATTCTCCCTTTTTCCCATTATACCCTTCTCCGCCGCCACCACCATCTCCCTCCGCCTTCGCTTCTTTCCCTGCAAACATCTCCTCCCTCATTCTCCCTCACCCTTCAAACTCCAAACACTCCTCCCCTAAACTCATTGCTGGAGCTGTAACCGCCGTTGTTCTCGCCGCCGCTGTCTCCGTCGTCTCCGCCGCCGTGTACTGCCGTAGACGGCGGAGACGGAACCAGTCTGCCGATGACAAGACTCTCAGATCCGACAGCAGCATTCGCCTCTTCCCCCGTGAGCCTCCCGGCGGCGGCGGTGGTCGGAAAACCAGAAACCCTTCTTCCACCAGCTCCGAGTTTCTCTACCTTGGCACTATTGTGAACTCCCGAGGCATCGACGACCGCACTGCCGGCACTGGCGGTGGCCGGAACAGCTCCGGCGGAGGTGACGCCAACTTAAATCCTCGGAAAATGGACTCGCCGGAGCTTCAACCACTACCGCCGCTTGCACGACAGAGTTCAAGAATGCAGCAGCGAGATTCCGGCACGGCGGCGACAGTTGCGGCGGCGGATGACGAAGAAGAAGAATTCTACTCACCAAGAGGGTCGTCATTGGGCGAAAGATCAGGTTCCCGGCGAGTATTCTCCGCCGTAGCAGGCGTCGATAAACTCGCCGGCGGCCATAGCTGCTCCGATTCAAGCTCCGGCTCGTACTCCTCCTCCACCTCGAACTCCCCGGACCGATCACACTCCATCAGCCTCTCTCCGCCGGTGAGTATCAGCCCCAGAAGATCCCAACCGAAGTCGCCGGAAAATCACATTCCACCACCGACACTAACCGGAGATAACAGAAGCAGAAGCAGAAGCTCAGTCTCATCCTCCAATCACTCTTCGCCACGTGTCATTTCACCTTCACTGTCCCCAGCTCACAACAACAACACTAACACGAACTTCACTCAAACGGCGTCGTATTCAACAACCCCAGAAAGAGAACTTAACCAGTCACCGTCGCTTTCACCGATTTCTCTCTCACCGAATCGTTTACACCGTAAAGCCTCAGATGGGTCACCGAAAATAACTGAAAAGTCTCAAACTTTAGCTTCTTCAGTGAAGGTTAGTGAAGTCTTTTCACCAGAGAGGCTATCCAATGCTTCTAATGGTAGTGGAAAGAGTAGCAGTGCATTATCATCTTCCACTTTTTCGCTTCCTTCACCGGATAAGGTTACAACTTTGATGCATCAGAATCATGGGTTGGATCAGTCTCCAACCATTTCTGATGTTTCAGATCGGTACAGGCATTCTCCAATTTCATCAGTGCCTTTGTCACCAGAGAGAGATTTGAATCACGGTGGTTGTGATAATAGTTCTTTTCATGCTCCTCCTCCACCACAGAGGAAGCACTGGGAGATTCCAGACCTGTTGACACCACCCATTACTGAATCTTCATCAATGGAGAGTGTGTTTGGAGCAGCACCAGCACCATCTGTTGTGGTTCCACAGAGGAAACAATGGGAGATTCCGGCGATTCCGGTGGTTTCGGCTCCTATTGATCCATCTGGTAGAGTTTCAGCTCCTCCTCCGCCTCCGCCGCCACCTCCTCCACCGCCCCCGCCACCTATGCTGCCACGACAGCGTAAGCAGTGGGAAGTGCCTTCTCCGTCAACGCCTGTGGATCAACCAATTTCGAGGCTGCCGGAGCTGACACCACCTACTAGGCCTTTTGTGTTGCAGACACCGAATACAAATGTTTATCTGGTTGAGTTGCCGCCACATTCGGGTTTGGAAGTGATTGAGGAGAGTTCTGAGGAGGGTTCTAAGCCAAAGCTGAAGCCTTTGCATTGGGATAAAGTGAGGGCAAGTTCTGATCGTGAGATGGTGTGGGATCAGTTGAGGTCCAGCTCCTTCAAGTTGAATGAGGAGATGATTGAGACATTGTTTGTAGTGAACACGCCAAACCCCAAACCCAAGGACACTACTCCTCGCTCGGTTCTTGCTCCTCCACATCAGGAGGATAGAGTGCTAGATCCCAAGAAGTCCCAAAACATTGCCATATTGTTGAGAGCACTCAACGTGACTATCGAAGAAGTGTGTGACGCACTGTTAGAAGGTATAACTGATACACTAGGAACAGAACTGCTCGAAAGCTTGTTAAAAATGGCACCTAGCAAGGAAGAAGAACGTAAATTGAAGGAACATAAAGATGACTCGCCAACCAAGCTTGGTCCTGCCGAGAAATTTTTGAAGGCAGTGCTTGATGTGCCTTTCGCGTTTAACCGGGTGGAAGCAATGCTTTACATTGCCAATTTTGAGTCTGAGTTGGAATATCTTAGGAAATCTTTTCAAACTCTAGAGGCTGCCTGTGACGAGTTGCGAAACAGCCGTATGTTCTTGAAGCTTCTAGAGGCTGTGCTTAAAACTGGTAACCGCATGAATGTGGGGACAAACCGAGGTGATGCACATGCCTTCAAGCTTGACACGCTTCTCAAGCTGGTTGATGTCAAAGGCGCAGACGGTAAAACCACTTTACTCCACTTTGTGGTACAAGAAATCATTAGAACCGAAGGGGCTCGCCTCTCAGGCACCAACCAAACTCCAAGCACGGCCACCAACGAAGACGTCAAATGCCGGAGGCTCGGCCTACAAGTAGTCTCTAGCCTAAGCTCAGAGCTAGCAAACGTGAAGAAATCTGCTGCCATGGATTCCGAAGTTCTCAGCAGTGAAGTTGCTAAACTCTCCAAAGGCATTGCACTCATCACCGAGGTTGTGAAGCTAAACCAAACATTAGGACCGGATGAAAGCAACCGCAAATTCACAGAATCGATGAACAAGTTCATGAGAATGGCTGAGGAGGAGATACTAAAGATTCAAGCACAAGAGAGTGTTGCAATTTCGCTTGTGAAAGAGATCACTGAGTATTTCCATGGAAACTTGTCAAAGGAAGAAGCTCATCCATTTAGAATCTTCATGGTGGTAAGAGACTTCTTGAATGTTCTTGATAGGGTTTGCAGGGAAGTTGGTATGGTTAATGAGAGAACCATGGTTAGTTCTAATCATAGATTCCCTATACCGGTGAACCCTTTGCTTCCACAACCTCTAAACCCTATGCTTCCACAACCTCTTCCTGGTTTACATGGAAAGAGAAACTATAGTTCCTCAGATGATGATAGTTCTTCATCACCTTAA 3417 0.5007 MWCISTTATTTLFFLLLFSELSYSQLHHHHHHHHRRILHQPLLPQPQNSSPTNISPPPSPSPSPSPPPSPKPKFPFSTTPTSQNSPFFPLYPSPPPPPSPSAFASFPANISSLILPHPSNSKHSSPKLIAGAVTAVVLAAAVSVVSAAVYCRRRRRRNQSADDKTLRSDSSIRLFPREPPGGGGGRKTRNPSSTSSEFLYLGTIVNSRGIDDRTAGTGGGRNSSGGGDANLNPRKMDSPELQPLPPLARQSSRMQQRDSGTAATVAAADDEEEEFYSPRGSSLGERSGSRRVFSAVAGVDKLAGGHSCSDSSSGSYSSSTSNSPDRSHSISLSPPVSISPRRSQPKSPENHIPPPTLTGDNRSRSRSSVSSSNHSSPRVISPSLSPAHNNNTNTNFTQTASYSTTPERELNQSPSLSPISLSPNRLHRKASDGSPKITEKSQTLASSVKVSEVFSPERLSNASNGSGKSSSALSSSTFSLPSPDKVTTLMHQNHGLDQSPTISDVSDRYRHSPISSVPLSPERDLNHGGCDNSSFHAPPPPQRKHWEIPDLLTPPITESSSMESVFGAAPAPSVVVPQRKQWEIPAIPVVSAPIDPSGRVSAPPPPPPPPPPPPPPPMLPRQRKQWEVPSPSTPVDQPISRLPELTPPTRPFVLQTPNTNVYLVELPPHSGLEVIEESSEEGSKPKLKPLHWDKVRASSDREMVWDQLRSSSFKLNEEMIETLFVVNTPNPKPKDTTPRSVLAPPHQEDRVLDPKKSQNIAILLRALNVTIEEVCDALLEGITDTLGTELLESLLKMAPSKEEERKLKEHKDDSPTKLGPAEKFLKAVLDVPFAFNRVEAMLYIANFESELEYLRKSFQTLEAACDELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARLSGTNQTPSTATNEDVKCRRLGLQVVSSLSSELANVKKSAAMDSEVLSSEVAKLSKGIALITEVVKLNQTLGPDESNRKFTESMNKFMRMAEEEILKIQAQESVAISLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLNVLDRVCREVGMVNERTMVSSNHRFPIPVNPLLPQPLNPMLPQPLPGLHGKRNYSSSDDDSSSSP 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271910g00001 1138 MobiDBLite consensus disorder prediction 354 424 - -
Stsc271910g00001 1138 Coils Coil 844 871 - -
Stsc271910g00001 1138 MobiDBLite consensus disorder prediction 156 171 - -
Stsc271910g00001 1138 MobiDBLite consensus disorder prediction 306 346 - -
Stsc271910g00001 1138 SMART it6_source 677 1091 IPR015425 -
Stsc271910g00001 1138 SUPERFAMILY Formin homology 2 domain (FH2 domain) 606 1086 - -
Stsc271910g00001 1138 Gene3D Formin, FH2 domain 670 1086 IPR042201 -
Stsc271910g00001 1138 MobiDBLite consensus disorder prediction 1109 1138 - -
Stsc271910g00001 1138 PANTHER FORMIN-RELATED 413 1129 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Stsc271910g00001 1138 MobiDBLite consensus disorder prediction 156 196 - -
Stsc271910g00001 1138 ProSiteProfiles Formin homology-2 (FH2) domain profile. 677 1102 IPR015425 -
Stsc271910g00001 1138 MobiDBLite consensus disorder prediction 210 289 - -
Stsc271910g00001 1138 Pfam Formin Homology 2 Domain 680 1076 IPR015425 -
Stsc271910g00001 1138 MobiDBLite consensus disorder prediction 248 262 - -
Stsc271910g00001 1138 MobiDBLite consensus disorder prediction 598 622 - -
Stsc271910g00001 1138 MobiDBLite consensus disorder prediction 436 510 - -
Stsc271910g00001 1138 MobiDBLite consensus disorder prediction 593 644 - -
Stsc271910g00001 1138 MobiDBLite consensus disorder prediction 302 547 - -
Stsc271910g00001 1138 MobiDBLite consensus disorder prediction 727 750 - -
Stsc271910g00001 1138 MobiDBLite consensus disorder prediction 50 75 - -
Stsc271910g00001 1138 MobiDBLite consensus disorder prediction 42 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271910g00001 Stsc-Chr271910 7874 13417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271910g00001 85 362 FH2 protein (formin) Gene Family AT3G25500 44.369 2.38e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271910g00001 - - gmx:100802678 1169.07