Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271909g00027 ATGGGCTCCGTACCAAACATATCCCACTTCTTCCCAGCTATGCAATCTCTTTATCTCGATAACAACAACCTCTCCTCCATCCCTGAGGGTTGCTTCCACAACCTAACCAATTTGCTTGAACTCTCTTTGGACAATAACAACCTCCCACCATGGAACTTTCCTACTGATTTGACTGCTCACTCCTCCCAACTCTTTGAACTCTACCTATCTTCTACAAATCTCATGGGCTCCCTACCAAACATATCCCAATTCTTCCCAGCTATGGAATCTCTTTATCTCTCTAACAACAACCTCTCCTCCATCCCCGAGGGTTGCTTCAACAACCTATCCAATTTGATTGGCCTCTCTTTGGCCAATAACACCAACATCCCACCATGGACCTTCCCTCTCCACTTGACCCATTCCTCATTGCAACTCCAATACCTCTACCTGGAGGCTACGAATCTTATGGGATCCCTACCAAACTTATCTCATTTCTTCCCCATCTTGGGAGATGTTAATCTCGCCAACAACAACCTTACCTCCATCCCCAAAGGTTGCTTCCAGGGTCTACCCTATTTGCAGTTCCTGCGGTTGGAAAACAACATAAACCTCGCACCATGGACCTTCCCTGACTTGATTCAGTCGAAAATGCTACAAGTCCTCAATCTGACTGCTACAAATGTCATGGGCTCTCTACCAGAAATATTTCACTCCATGACAAGTTTGCATACTCTTCTTCTCTCCAATAATATCCTCTCTGGCAGCTTGCCAGAGTCTTTTAGAGAGTCCAAGGTTATCACTTTGCATCTCAACGACCAGAAGGGTAAGGGGTTTTCGGGTACAATTGATGTCCTTTCAAGCATGATCGATTTATCTGAAGCGTGGCTTCAGGGAAACTCCTTTGAAGGATATATCCCTGACATGTCTCATTGTACCGCCTTACAAGATTTACAACTTGCTCATAATCGATTAACAGGTGTGGTTCCAGATTCTCTGATAAGTCTAAGTAAGGGTCAGGGGAACCTGCGTAGAGTTTCTTTGAACAACAACTTTTTGCAGGGTCCTATGCCTAACTTTGCCCTTTATGTCAACGGCGGGTACGTGAATGTTGGTGATAACACCACAAATTCCTTTTGTCGACAAGATTTTGAACCTTGTGACCAGAGAGTTACCATTTTGCTTGAAATTGCTGAAGCATTTAGATATCCTATTCTTTTGGCACGTTCATGGCCAGGGAATAATCCTTGTCATGATTGGAGTTTCGTTGAATGCACCGGGCATATGATTACAACCGTGAATTTGACAAGCCTGAATTTGAATGGAACTATCTCACCTGCATTTGCTAACTTAACTCATTTGCAAAACTTGTACCTGAGTGGAAACAGTTTAGACGGTTTAATACCCGAAAACTTGACAACTCTTCATCAACTCAAGAATCTCGATGTCTCCAATAACAACTTATCAGGAAAAATTCCCAATTTCTCAAGCGGAGTACACCTGAATACTAATGGCAATCCTTCATTAGAGAGAAGAAATCCTTCCATCGAGAAAAGAAATCTACATGCTTGGATCCCAGGCTTATCAGCAGCAATTGCTGTTGGAATCTTTTTAACATTTGTTGTGGTTATTTACAAAAGCAAGAGGTTACAGAAAATCTTGTTCAAGAGAACAACCTTTGATGGCAATGTTGAGGATTTGATACAAAGTCATGGGTTTATGGTGCACACACGATATAGTTATTCACAGCTAAAAAAGGTTACCAATTCATTTCGTGAGAAACTAGGAGAAGGAGGTTTTGGTACTGTGTATAAGGGAACTTTGAGTGATGGTCGTCAAGTAGCTGTGAAGATTTTGAAGGAATCTGAAGGTAATGGAGAAGATTTCATAAATGAGGTTGCAAGTATTGATAGAACATCCCATGTGAATATTGTCCCGTTTTTAGGTTTTTGTTATGAGACAAATAAAAGAGCTCTCATTTATGAATTCATGCCAAACGGCTCTTTAGATAAATTTGTGGATGAAAAAGCATCATTTAGTACTGTGTGTAAATTGGATTGGAATAGACTCTACCAAATTATAATTGGGATTGCTCGGGGACTAGAATATTTACATTGGGGATGTAGTACCAAGATTTTACATCTTGATATTAAACCTCAGAATATTCTTTTGGACGAGGATTTTGTTCCCAAAATTGCTGATTTTGGATTAGCTAAACTGTGCACAAAGAAGGAGAGCATTGTATCTTTACAATGTGCAAGAGGAACTGCAGGATATATTGCACCGGAAGTATATAATCAAACATGCACCGGAGTATCTCGAGTTTCTCATAAATCTGACGTGTATAGTTATGGGAGGTTGATTCTTGCAGTAGTGGGAGGAGAAAAGAATTATAATAGTAGAGAGTCCCGTACCAGTGAAATGTTCTTTACAGATTGGATTTATAAGGAATTGGAGCAAGATAACCTTCCAGCAACATGCTTGAAGAACACAGAGGATGAAAATGATGATCTGGTAAAGAAGATTATTTTGGTAAGCTTGTGGTGTATCCAAAGAAATCCATCCGAGAGACCATCCATAAAAAAGGTAATAGAGATGTTGGAAGGGCCAGTTGATTCTATCCCATTTCCTCCAAAACCAATGTGGTGTTCTCCCCAAGGATCAAGGTTGCAATCTTCTCCAGATATAGCTTGTGATGACAATACAAATGAGACAGATTCATTAACTTCAGTGGAGAATGATTCCATCAATTCAAATGGATTTGTCTAA 2748 0.4039 MGSVPNISHFFPAMQSLYLDNNNLSSIPEGCFHNLTNLLELSLDNNNLPPWNFPTDLTAHSSQLFELYLSSTNLMGSLPNISQFFPAMESLYLSNNNLSSIPEGCFNNLSNLIGLSLANNTNIPPWTFPLHLTHSSLQLQYLYLEATNLMGSLPNLSHFFPILGDVNLANNNLTSIPKGCFQGLPYLQFLRLENNINLAPWTFPDLIQSKMLQVLNLTATNVMGSLPEIFHSMTSLHTLLLSNNILSGSLPESFRESKVITLHLNDQKGKGFSGTIDVLSSMIDLSEAWLQGNSFEGYIPDMSHCTALQDLQLAHNRLTGVVPDSLISLSKGQGNLRRVSLNNNFLQGPMPNFALYVNGGYVNVGDNTTNSFCRQDFEPCDQRVTILLEIAEAFRYPILLARSWPGNNPCHDWSFVECTGHMITTVNLTSLNLNGTISPAFANLTHLQNLYLSGNSLDGLIPENLTTLHQLKNLDVSNNNLSGKIPNFSSGVHLNTNGNPSLERRNPSIEKRNLHAWIPGLSAAIAVGIFLTFVVVIYKSKRLQKILFKRTTFDGNVEDLIQSHGFMVHTRYSYSQLKKVTNSFREKLGEGGFGTVYKGTLSDGRQVAVKILKESEGNGEDFINEVASIDRTSHVNIVPFLGFCYETNKRALIYEFMPNGSLDKFVDEKASFSTVCKLDWNRLYQIIIGIARGLEYLHWGCSTKILHLDIKPQNILLDEDFVPKIADFGLAKLCTKKESIVSLQCARGTAGYIAPEVYNQTCTGVSRVSHKSDVYSYGRLILAVVGGEKNYNSRESRTSEMFFTDWIYKELEQDNLPATCLKNTEDENDDLVKKIILVSLWCIQRNPSERPSIKKVIEMLEGPVDSIPFPPKPMWCSPQGSRLQSSPDIACDDNTNETDSLTSVENDSINSNGFV 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271909g00027 915 MobiDBLite consensus disorder prediction 877 915 - -
Stsc271909g00027 915 ProSitePatterns Serine/Threonine protein kinases active-site signature. 705 717 IPR008271 GO:0004672|GO:0006468
Stsc271909g00027 915 FunFam Suppressor of npr1-1 constitutive 4 556 656 - -
Stsc271909g00027 915 Gene3D Ribonuclease Inhibitor 126 363 IPR032675 -
Stsc271909g00027 915 Gene3D Ribonuclease Inhibitor 381 506 IPR032675 -
Stsc271909g00027 915 Gene3D Transferase(Phosphotransferase) domain 1 657 866 - -
Stsc271909g00027 915 SMART serkin_6 582 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271909g00027 915 MobiDBLite consensus disorder prediction 878 915 - -
Stsc271909g00027 915 Pfam Protein kinase domain 585 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271909g00027 915 FunFam Leucine-rich repeat receptor-like kinase 382 505 - -
Stsc271909g00027 915 ProSiteProfiles Leucine-rich repeat profile. 87 108 IPR001611 GO:0005515
Stsc271909g00027 915 Gene3D Phosphorylase Kinase; domain 1 558 656 - -
Stsc271909g00027 915 ProSiteProfiles Protein kinase domain profile. 582 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271909g00027 915 PANTHER OSJNBA0070M12.3 PROTEIN 2 99 - -
Stsc271909g00027 915 SUPERFAMILY L domain-like 138 494 - -
Stsc271909g00027 915 Gene3D Ribonuclease Inhibitor 2 125 IPR032675 -
Stsc271909g00027 915 SMART LRR_typ_2 305 328 IPR003591 -
Stsc271909g00027 915 SMART LRR_typ_2 109 130 IPR003591 -
Stsc271909g00027 915 SMART LRR_typ_2 444 468 IPR003591 -
Stsc271909g00027 915 SMART LRR_typ_2 160 183 IPR003591 -
Stsc271909g00027 915 SMART LRR_typ_2 35 60 IPR003591 -
Stsc271909g00027 915 SMART LRR_typ_2 233 256 IPR003591 -
Stsc271909g00027 915 SMART LRR_typ_2 11 34 IPR003591 -
Stsc271909g00027 915 SMART LRR_typ_2 85 108 IPR003591 -
Stsc271909g00027 915 FunFam PR5-like receptor kinase 657 870 - -
Stsc271909g00027 915 SUPERFAMILY L domain-like 8 195 - -
Stsc271909g00027 915 ProSitePatterns Protein kinases ATP-binding region signature. 588 610 IPR017441 GO:0005524
Stsc271909g00027 915 Pfam Leucine rich repeat 138 195 IPR001611 GO:0005515
Stsc271909g00027 915 Pfam Leucine rich repeat 13 74 IPR001611 GO:0005515
Stsc271909g00027 915 SUPERFAMILY Protein kinase-like (PK-like) 560 860 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271909g00027 Stsc-Chr271909 158017 161164 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271909g00027 571 898 Receptor kinase-like Gene Family AT5G38280 56.325 1.47e-117 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc271909g00027 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271909g00027 - K00924 aip:107635702 1180.62