Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271909g00026 ATGGCTCCCAGAATAATATCACAATCTGAAATTGGTTTTACTACTTTCCCTACACTCTTCTTCTTCTTCTTCTTGATCATCTTGTGTGTCCACTCCGACGACGTTAGTAACCTTCGAGATCCAGAAGGTTACTACTTGAATGAGCTTTTGAAAAGCCTGAACCCACCTCCCTCCAACTGGTCCCATAACAACAACTACCTCGCCGCCAATGTTTGTAATTGGCGTGGCGTTGAGTGCAATAACGAGGGCCATGTCTACGCTCTTGACATCTCTTCAATGTCCCTCCAAGGCACAATCCCTTCCGATCTCAACATCTACCTCACCAACCTCAACCAACTTCTTCTATACAACAACTCTCTCTCGGGGCCTCTTCCCTCTCTCGCCGGCCTCTCCATGCTCAGAGAGGTTTACCTCAACGACAACAATTTCACCTCCGTCCCTGATCATTGCTTTCAGGGTCTTTCCAGTTTGGAAACCCTCACACTAAGTAACAACATCAACCTCCAACCCTGGAATTTCCCTCCTGATTTGGCTCACTCCTCCTCCAAACTCAACCGCCTCGAATTGGACGGAACAAATCTTATGGGAACCTTACCACCTGAAATATGCACTTCCTTCCCCAACCTGACCTCTCTTGACCTCTTTAACAACAAGCTCACTGGTCCCCTGCCTGATTTTTCCAATTGCACCAACTTCGGTTGGCTGGATCTTCAAGATAACTTGCTAACTGGTCTAGTTCCACCTTCCTTGATGAATCTCTCCAGTTCTCCTTCAGTGGATTTGGAAAACAACTATCTTCAGGGTCCATTGCCAGTGTTTAAAGAAGACATTACTGCCAACACTAGCAATAATAGGTTCTGTTTAGACCATGCTGGGCCTTGTGACAATCGAGTCACTACTCTGCTTCAAATTGCTGAGGCCTTTGGGTATCCTCTCTTGTTGGCCACATCCTGGCCTGGAAACAATCCCTGTCAAAACTGGAGTTTCGTTGTGTGCATCCAGAACAAGATCACAACCCTCAATTTCACCAAACTAAATTTGACTGGGACCATCTCTCCTGCATTTAGAAACTTAACTGATTTGAGGGAGTTGTATCTAAGTGCAAATCATTTGAGTGGGTCAATTCCAGAGAGCTTAATAGGTCTACCTGAACTTAAGGTTGTTGATGTCTCAAATAACAATCTATCAGGGAACATACCCAATTTCTCACCTAATGTCTCTCTCAACACTAAGGGTAATTTTCTGCTCCGCAACGCTTCTCATCATCAAGCAAGCACAAAACCTCCATCGAAAGCTTCATTACCACTTTCCTTAATTGCAGGCTTATCAGCAGCAATTGTTGGAATCTTTTTAACATGTGTTGTGGTTATTTACAAAAGCAAGAGGTTAAGGAAAATCTTGTTCAAGAAAACAACTGTTGATCGCAATGTTGAGGATTTGATACAGAGTCATGGGTTTATAGTGCAGAAACGATATAGTTACTCACACATAAAAAAGATTACCAATTCATTTAGTGAGAAACTAGGACAAGGAGGTTTTGGTACTGTATATAAAGGAACTTTGAGTGATGGTCGTCAAGTAGCTGTGAAGATATTGAAAGAATCCCAAGGTAATGGTGAAGATTTCATAAATGAGGTTGCAAGTATTAATAGAACATCTCACGTGAATATCGTTCCTTTTTTAGGATTTTGTTATGAGACAGATAAAAGAGCTTTGATTTATGAATTCATGTCAAATGGGTCTTTAGATAAATTTGTCGATGAAAAAGCATCATTTAGTGCTGTGTGTAAATTGGATTGGAGTAGACTCTACCAAATTACAATTGGCATTGCTCGAGGACTAGAGTATTTACATGGGGGATGTAGTACCAAGATTTTACATCTTGATATTAAACCTCAAAATATTCTTTTGGATGAAAATTTTGTTCCTAAAATTGCTGATTTTGGATTAGCTAAACTTTGCACAAAGAATGAGAGCATTGTATCTCTACAATGTGCGAGAGGAACTCCAGGATATATTGCACCAGAAGTTTATAATCAAATACGTTTAGGAGTATCTCGGGTTTCTCATAAATCTGATGTGTATAGCTACGGGAGATTAATTCTTGCAGTAGTCGGAGGAAAAAAGAATTATAATAGTAGAGACTCCCAAGGTAGTGAAATATACTTTACAGAATGGATTTATAAGGAATTGGAGCAAGATAATCTTCCAGCAACATGCTTGGTGAACACAGAGGATGAAAATTATTTGGTAAAGAAGATTATTTTGGTAAGTATGTGGTGTATACAGAAAATTCCGTCAGACAGACCATCCATGAAAAGAGTGATAGAGATGCTAGAAGGACCACTTGATTCTATTCCATTTCCTCCAAAACCACCGCTGTGGCATTCTCCCCAAGGATCAAACTTGCAGTCTCCAGATGACAATACAGTTGAGGCAGATTCATTAACTTCCGTGGAGAATGATCCCATAAATCCAAATGGGTTTGCATAA 2493 0.4059 MAPRIISQSEIGFTTFPTLFFFFFLIILCVHSDDVSNLRDPEGYYLNELLKSLNPPPSNWSHNNNYLAANVCNWRGVECNNEGHVYALDISSMSLQGTIPSDLNIYLTNLNQLLLYNNSLSGPLPSLAGLSMLREVYLNDNNFTSVPDHCFQGLSSLETLTLSNNINLQPWNFPPDLAHSSSKLNRLELDGTNLMGTLPPEICTSFPNLTSLDLFNNKLTGPLPDFSNCTNFGWLDLQDNLLTGLVPPSLMNLSSSPSVDLENNYLQGPLPVFKEDITANTSNNRFCLDHAGPCDNRVTTLLQIAEAFGYPLLLATSWPGNNPCQNWSFVVCIQNKITTLNFTKLNLTGTISPAFRNLTDLRELYLSANHLSGSIPESLIGLPELKVVDVSNNNLSGNIPNFSPNVSLNTKGNFLLRNASHHQASTKPPSKASLPLSLIAGLSAAIVGIFLTCVVVIYKSKRLRKILFKKTTVDRNVEDLIQSHGFIVQKRYSYSHIKKITNSFSEKLGQGGFGTVYKGTLSDGRQVAVKILKESQGNGEDFINEVASINRTSHVNIVPFLGFCYETDKRALIYEFMSNGSLDKFVDEKASFSAVCKLDWSRLYQITIGIARGLEYLHGGCSTKILHLDIKPQNILLDENFVPKIADFGLAKLCTKNESIVSLQCARGTPGYIAPEVYNQIRLGVSRVSHKSDVYSYGRLILAVVGGKKNYNSRDSQGSEIYFTEWIYKELEQDNLPATCLVNTEDENYLVKKIILVSMWCIQKIPSDRPSMKRVIEMLEGPLDSIPFPPKPPLWHSPQGSNLQSPDDNTVEADSLTSVENDPINPNGFA 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271909g00026 830 SMART LRR_typ_2 358 382 IPR003591 -
Stsc271909g00026 830 SMART LRR_typ_2 206 228 IPR003591 -
Stsc271909g00026 830 SMART LRR_typ_2 130 153 IPR003591 -
Stsc271909g00026 830 Pfam Leucine rich repeat 338 395 IPR001611 GO:0005515
Stsc271909g00026 830 Pfam Leucine rich repeat 133 194 IPR001611 GO:0005515
Stsc271909g00026 830 Gene3D Phosphorylase Kinase; domain 1 477 576 - -
Stsc271909g00026 830 Gene3D Ribonuclease Inhibitor 40 287 IPR032675 -
Stsc271909g00026 830 Pfam Protein kinase domain 505 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271909g00026 830 SMART serkin_6 502 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271909g00026 830 ProSitePatterns Protein kinases ATP-binding region signature. 508 530 IPR017441 GO:0005524
Stsc271909g00026 830 FunFam Leucine-rich repeat receptor-like kinase 296 419 - -
Stsc271909g00026 830 SUPERFAMILY Protein kinase-like (PK-like) 480 779 IPR011009 -
Stsc271909g00026 830 ProSiteProfiles Protein kinase domain profile. 502 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271909g00026 830 MobiDBLite consensus disorder prediction 789 830 - -
Stsc271909g00026 830 PANTHER OSJNBA0070M12.3 PROTEIN 203 780 - -
Stsc271909g00026 830 Pfam Leucine rich repeat N-terminal domain 298 332 IPR013210 -
Stsc271909g00026 830 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Stsc271909g00026 830 Gene3D Ribonuclease Inhibitor 295 419 IPR032675 -
Stsc271909g00026 830 FunFam Suppressor of npr1-1 constitutive 4 473 576 - -
Stsc271909g00026 830 ProSiteProfiles Leucine-rich repeat profile. 208 230 IPR001611 GO:0005515
Stsc271909g00026 830 SUPERFAMILY L domain-like 48 408 - -
Stsc271909g00026 830 FunFam PR5-like receptor kinase 577 789 - -
Stsc271909g00026 830 Gene3D Transferase(Phosphotransferase) domain 1 577 785 - -
Stsc271909g00026 830 MobiDBLite consensus disorder prediction 797 824 - -
Stsc271909g00026 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271909g00026 Stsc-Chr271909 143623 147348 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271909g00026 439 805 Receptor kinase-like Gene Family AT1G66910 52.800 5.23e-122 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc271909g00026 Pkinase 3.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271909g00026 - K00924 aip:107635702 676.396