Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271909g00025 ATGTTGAAGCTTCTGAATGCACTCCAACCCACTCCCTCCAACTGGTCCAGCACCACCCACATGTGCAACTGGACAGGGGTGTTCTGCAACAATCGAACTGGAAGGATTGAAGGTATATACCTTAGATCAATGTCGTTGACGGGAACAGTTCCTTCAGGCCTCAACGACTCACTCACACAACTCACAGAACTCGTTCTCTATGGCAATTTTCTGAGTGGGCCTGTTCCCTCTCTCGCCAATCTCACCTTCCTCCAAAAAGTGATCCTCGACAACAACAACTTCAACTCCATCCCTCATGGTTGCTTCCATGCTCTAACTAGTTTAAACTTCTTGAGCTTGACTTACAATACGAACCTCCCACCATGGAACTTTCCTACCGATTTGATTGCTCACTCCTCCCAACTCCAACGACTCTTCCTGGAGGGGACAAATCTCACAGGATCCTTACCTAACATATCCCGTTCCTTCCCAGCTATGGAATTTCTTTATCTCGATAACAACCTCCTCTCCTTCATCCCTGAGGGTTGCTTCCACAACCTAACCAATTTGACTGACCTCTCTTTGGCCAATAACATCAACCTCCCACCATGGACTTTTCCCAACTTATCTCACTCCACAAAACTGGTTATGCTCAATCTTGTTGCTACAAATGTCATGGGCTCCCTACCAAACATATCCCATTCCTTCCCAAGTATCCGAATTCTTTATCTGGATAACAACCACCTCACCTCCATCCCTGAGGGTTGCTTCAACAACCTAACCAATTTGACTGAACTCTCTTTGGCCAATAACACCAACCTCTCACCGTGGACCTTCCCCCTCCCCGTCTTGACTCAGCAACTCTACACCCTTAAACTGGAGGCTACAAATCTAATGGGACCCCTACCAAACTTATCTCATTTCTTCCCCAGCTTGACAACTGTTTCTCTCTCCAACAACAACCTTACCTCCATCCCCCAAGGTTGCTTCCAGGCTCTACCGTATTTGCAGTTCCTGCGGTTGGGAAACAACACCAACCTCACACCATGGACTTTTCCCAACTTGACTCAGTCCGCAAAACTAAAAGAGCTCAATCTTGTTGCTACAAATGTGGTGGGCTCCCTACCATCACAAATATGTGACTCCTTGACAAGTTTGCAGACTCTTCTTCTCTCCAACAATACCCTCACTGGTGGCTTGCCAGAGTCTTTCGGAGGCTCCAAGATTGGCACTCTGCATCTCAATAACCAGAAGGGTAGCGGGTTTTCGGGTCCAATTGATGTCCTTTCAAGCATGGTCGACTTATCTGAAGTGTGGCTTCAGGGGAACTCGTTTACAGGACCTATTCCTGACTTGTCTCGTTGCAGCTCCTTACAAGATTTGCAACTTGGCCACAATCAACTAACAGGCGTGGTTCCAGATTCTCTCCTTAATAATGTTCTCCCATATTTGGATGACTTTTATTTGGGCTATAACTTTTTGCAAGGTCCTGTACCAAATCTTACCTTTACTGGTTTTGATAGTATGAATCTTGGTGTTAACACCACGAATGGCTTCTGTCACAAAGATCCTGGACCATGTGATCACAGAGTAACCATTTTGCTTGAAATTGCTGCGGAATTTAAGTATCCAATTTTGTTGGCACGTACATGGAAAGGAAATAATCCTTGCAAAGGTTGGCGTTCCATTTCGTGTGATGACAAAAGTAAGATCAGAACGGTGAATTTGTCAAATCTAAATTTGACGGGCACAATCTCTCCTGCATTCGCCAATTTAACTTATTTGCAGGGATTGTATTTGGATGGGAATAATTTGACTGGTGAAATACCGGAGCTATTGACAAGTTTGCATCAACTTGAGCTTCTGAATGTCTCTAACAACCACCTTGTTGGAAATATTCCCAAATTCTCACCCAAGGTTAAGTTTTTTGCCACAGGCAATGATTTTTCTAATGGTTCTCACCACAGACCAAATCGAATCTCAACTCCTTTGATTACAGTTATATCGGTAACTAGTTTTGCTGGAGTTATTATAATCCTTGTTTTGGTTATTTATAACCGCAAGAGGTGCCTTGATTTGGTACATCGGGTTATCTTCAAGACAACATATAATGACCAACAAATCGAGGATTTTATAAAAGGTTATGATTTTTTGGCACCAAAGCGATCCAGTTATTCTGAGCTGAAAAGAATGACAAATTCATTTGGCGAAAAATTAGGCCAAGGTGGCTATGGCACTGTATACAAAGCAACTTTAAGTGATGGTCGTGAAGTTGCAGTGAAGATACTAAGCGAGTCTAAGGGAAGTGGAGAAGAGTTCATAAATGAAGTTGCTAGTATTAGTAGAACATCGCATGTGAACATTGTCTCATTGTTGGGATTTTGTTACGACCAAGGTAGAAGAGCACTTATTTATGAATTCATGCCTAATGGTTCTTTAGATAAATACATTTATAAAGCAGGATCTCCTGATGCCTTTTGTAATTTGGATTGGAGCATTCTGTACAAAATTGCAATTGGCATTGCTCAAGGGCTGGAATACTTACATCAAGGATGTAGTACAAAAATCTTGCATCTTGATATCAAACCTGAAAACATTCTTTTAGATGAAGATTTTTGTCCCAAAATCTCGGATTTTGGACTAGCTCGAATCTGTCAAAAAAAAGAGAGTAATGTATCTATTTTAGGTACAAGAGGAACTCCAGGTTACATTGCACCGGAAGTTTTCAGTCGATCATATGGTAGAGTTTCTGATAAATCTGATGTATATAGTTACGGTATGTTAATCCTTGATATGTTTGGAAAAAGGAAGTACTTCAACCACAAAGGATCACATCCGAGTGAAATGTATTTTCCTGATTGGATTTATGAGGATCTTAATCAAGGTAATATTCTTGGTGGACACTCTGATATTTCAGAAGAAGAAAATGATACGATAACAAAAGTCATATTAGTAAGTTTGTGGTGTATTCAACCAAATCCATCACATAGGCCATCAATGAGTAAAGTTGTGGAGATGTTGCATGGAGAACTTGAATCAGTGCCGTTCCCTCCAAAGCCTGTGTTGTATTCTCCTGAAAAGTCTCTGTTAGAAGCTTCAGACATATCTTCCAGCAGTAAACATGAGACCATTTTGACAACCACAGAGGAGAGTAGTTCCACACATCATACAAAATGA 3156 0.4163 MLKLLNALQPTPSNWSSTTHMCNWTGVFCNNRTGRIEGIYLRSMSLTGTVPSGLNDSLTQLTELVLYGNFLSGPVPSLANLTFLQKVILDNNNFNSIPHGCFHALTSLNFLSLTYNTNLPPWNFPTDLIAHSSQLQRLFLEGTNLTGSLPNISRSFPAMEFLYLDNNLLSFIPEGCFHNLTNLTDLSLANNINLPPWTFPNLSHSTKLVMLNLVATNVMGSLPNISHSFPSIRILYLDNNHLTSIPEGCFNNLTNLTELSLANNTNLSPWTFPLPVLTQQLYTLKLEATNLMGPLPNLSHFFPSLTTVSLSNNNLTSIPQGCFQALPYLQFLRLGNNTNLTPWTFPNLTQSAKLKELNLVATNVVGSLPSQICDSLTSLQTLLLSNNTLTGGLPESFGGSKIGTLHLNNQKGSGFSGPIDVLSSMVDLSEVWLQGNSFTGPIPDLSRCSSLQDLQLGHNQLTGVVPDSLLNNVLPYLDDFYLGYNFLQGPVPNLTFTGFDSMNLGVNTTNGFCHKDPGPCDHRVTILLEIAAEFKYPILLARTWKGNNPCKGWRSISCDDKSKIRTVNLSNLNLTGTISPAFANLTYLQGLYLDGNNLTGEIPELLTSLHQLELLNVSNNHLVGNIPKFSPKVKFFATGNDFSNGSHHRPNRISTPLITVISVTSFAGVIIILVLVIYNRKRCLDLVHRVIFKTTYNDQQIEDFIKGYDFLAPKRSSYSELKRMTNSFGEKLGQGGYGTVYKATLSDGREVAVKILSESKGSGEEFINEVASISRTSHVNIVSLLGFCYDQGRRALIYEFMPNGSLDKYIYKAGSPDAFCNLDWSILYKIAIGIAQGLEYLHQGCSTKILHLDIKPENILLDEDFCPKISDFGLARICQKKESNVSILGTRGTPGYIAPEVFSRSYGRVSDKSDVYSYGMLILDMFGKRKYFNHKGSHPSEMYFPDWIYEDLNQGNILGGHSDISEEENDTITKVILVSLWCIQPNPSHRPSMSKVVEMLHGELESVPFPPKPVLYSPEKSLLEASDISSSSKHETILTTTEESSSTHHTK 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271909g00025 1051 Pfam Leucine rich repeat 303 337 IPR001611 GO:0005515
Stsc271909g00025 1051 Pfam Leucine rich repeat 230 267 IPR001611 GO:0005515
Stsc271909g00025 1051 Pfam Leucine rich repeat 134 191 IPR001611 GO:0005515
Stsc271909g00025 1051 SUPERFAMILY L domain-like 8 359 - -
Stsc271909g00025 1051 CDD STKc_IRAK 732 1000 - -
Stsc271909g00025 1051 MobiDBLite consensus disorder prediction 1025 1045 - -
Stsc271909g00025 1051 ProSiteProfiles Leucine-rich repeat profile. 304 325 IPR001611 GO:0005515
Stsc271909g00025 1051 Gene3D Ribonuclease Inhibitor 522 643 IPR032675 -
Stsc271909g00025 1051 SUPERFAMILY Protein kinase-like (PK-like) 711 1000 IPR011009 -
Stsc271909g00025 1051 Gene3D Transferase(Phosphotransferase) domain 1 801 1007 - -
Stsc271909g00025 1051 MobiDBLite consensus disorder prediction 1025 1051 - -
Stsc271909g00025 1051 FunFam serine/threonine-protein kinase PBS1-like 696 800 - -
Stsc271909g00025 1051 SMART LRR_bac_2 302 321 - -
Stsc271909g00025 1051 SMART LRR_bac_2 585 605 - -
Stsc271909g00025 1051 SMART LRR_bac_2 609 629 - -
Stsc271909g00025 1051 SMART LRR_bac_2 376 396 - -
Stsc271909g00025 1051 SMART LRR_bac_2 229 248 - -
Stsc271909g00025 1051 Gene3D Ribonuclease Inhibitor 271 508 IPR032675 -
Stsc271909g00025 1051 Gene3D Ribonuclease Inhibitor 3 270 IPR032675 -
Stsc271909g00025 1051 ProSitePatterns Serine/Threonine protein kinases active-site signature. 849 861 IPR008271 GO:0004672|GO:0006468
Stsc271909g00025 1051 ProSiteProfiles Leucine-rich repeat profile. 231 252 IPR001611 GO:0005515
Stsc271909g00025 1051 SMART serkin_6 726 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271909g00025 1051 SMART LRR_typ_2 302 325 IPR003591 -
Stsc271909g00025 1051 SMART LRR_typ_2 81 104 IPR003591 -
Stsc271909g00025 1051 SMART LRR_typ_2 229 252 IPR003591 -
Stsc271909g00025 1051 SMART LRR_typ_2 376 399 IPR003591 -
Stsc271909g00025 1051 SMART LRR_typ_2 448 471 IPR003591 -
Stsc271909g00025 1051 SMART LRR_typ_2 585 609 IPR003591 -
Stsc271909g00025 1051 SMART LRR_typ_2 180 201 IPR003591 -
Stsc271909g00025 1051 SMART LRR_typ_2 253 274 IPR003591 -
Stsc271909g00025 1051 SMART LRR_typ_2 156 179 IPR003591 -
Stsc271909g00025 1051 ProSitePatterns Protein kinases ATP-binding region signature. 732 754 IPR017441 GO:0005524
Stsc271909g00025 1051 Pfam Leucine rich repeat N-terminal domain 2 30 IPR013210 -
Stsc271909g00025 1051 Pfam Leucine rich repeat N-terminal domain 526 559 IPR013210 -
Stsc271909g00025 1051 Gene3D Phosphorylase Kinase; domain 1 702 800 - -
Stsc271909g00025 1051 FunFam PR5-like receptor kinase 801 1011 - -
Stsc271909g00025 1051 SUPERFAMILY RNI-like 280 627 - -
Stsc271909g00025 1051 ProSiteProfiles Protein kinase domain profile. 726 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271909g00025 1051 FunFam Leucine-rich repeat receptor-like kinase 522 646 - -
Stsc271909g00025 1051 PANTHER OSJNBA0070M12.3 PROTEIN 279 1005 - -
Stsc271909g00025 1051 Pfam Protein kinase domain 729 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271909g00025 Stsc-Chr271909 135931 139763 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271909g00025 694 1031 Receptor kinase-like Gene Family AT5G38280 56.232 1.54e-125 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc271909g00025 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271909g00025 - K00924 aip:107635702 1113.6