Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271909g00023 ATGGCGGCATACCTGAAATCAAGATTAAAAAATGGTATTATTAGTATTTGTATCCTTGTTATGAGCTTGGGTTGTGCCAAGTCCAATGATGGCGAACGTGAATACATGTTGAAGCTTCTGAATGCACTCAAACCCACTCCCTCAAACTGGTCCAACACCACCCACATGTGCCACTGGACAGGGGTGACTTGCAACGATCAAAGTGGAAGGATTGAAGAGATCGATCTCAGAGATATGTCGCTGACGGGAACAGTTCCTTCAGGCCTCAATGACTCCCTCACACAACTCAAATACCTCATCCTCTTCAACAATTCTCTGAGTGGGCCTGTTCCCGCTCTCGCCAACCTCACCTTCCTCGAAACAATGTACCTCGACAATAACAACTTCAACTCCATCCCTCATGGTTGCTTCCATGCTCTAACTAGTTTAAACTGGTTGAGCTTGACTTACAATACCAAGCTCCCACCATGGAACTTTCCTACCGATTTGACTGCTCACTCCTCCCAACTCCAACGACTCTTCCTAGAGGGGACAAATCTCATGGGCTCCATACCAAACATATCACAATTCTTCCCAGCTATGGAACGTCTTTATCTCTCTAACAACAACCTCTCTTCCATCCCAGAGGGTTGCTTTTACAACCTAACCGATTTGACTGACCTCTCTTTGGCCAATAACACCAACCTCCCACCATGGACTTTCCCTCTCCAATTGACTCATTCCTCATCGCTACTCAACTACCTCGACCTCCAGGCTACAAATCTTATGGGATCCCTACCAAGCTTATCTGATTTCTTCCCTATCTTGATGTATGTTTATTTCTCCAACAACCACCTACCTTCATCCCCCAAGGTTGCTTCCAGGACTCTTCTTCTCTCCAACAACAGCCTCACTGGTGGCTTGCCAGAGTCTTTTGGAGGCTCCAGGATTGCCATTTTGCATCTCAATAACCAGAAGGATGAGGGGTTCTCAGGTACAATCGATGTCCTTTCAAGCATGTCCGACTTATCTCAAGTGTGGCTTCAATGGAACTCCTTTACAGGACCTATTCCTGACTTGTCTCGTTGCGCCTCCTTACAAGATTTGCAACTTGGCCACAATCAATTAACAGGCGTGGTCCCAGATTCTCTCATCGCTCTTGCAAATTTGAACAATTTTTCTTTGGACTATAACTATTTGCAAGGTCCTGTACCAGAAATTGACCCGGATGACTTTGATACTGTGAATCTTGGTGTTGACACCACAAATGGATTCTGTCACAAAGATCCTGGACCATGTGATCAGAGAGTAACCATTTTGCTTGAAATTGCTGCGGAATTTAAGTATCCAATTTTGTTGGCACGTACATGGAAAGGAAATAATCCTTGTAAAGGTTGGCGCTCCATTACGTGTGATGACAAAAGTAAGATCAGAATGGTGAATTTGTCAAATCTAAAATTGACGGGCACAATCTCATCTGCATTCGCCAATTTAACTGATTTGCGGGAATTGTATTTGAATGGGAATAATTTGACGGGTGAAATACCAGATGGATTGACAAGTTTGCCTCAACTTGAGCTCGTGAATGTCTCTAACAACCACCTTGCAGGAAATATTCCCAAATTCTCAACAAAGGTTAAGGTTTTTACCGCAGGCAATGATTTTTTACAGCTTCCATCTAATGGTTCTTCTGACCATAGACGACCAAGTCGAATCTCAACTCCTTTGATTACAGCCACGATAGCAGCAGCAGCTGGTATTGGAGGTCTTGTTCTCTTGGTTATAGTTATTTGTAACCGAAAGAGGTGTCTTAGCTTCTTACAGAGGATTATGTCCAAGGAAACAGGACCATTTGTTGATAATGAATTTGAAGAATTCATGAAAAGTTATGGATCTTTGATGTTAAGGAGATATAATTATTCTGAAGTGAAAAGGATGACAAATTCATTTCAAGATAAATTAGGAAGGGGAGGATATGGCATTGTATACAAAGCATGCTTAAGTGATGGTTGTCCTGTGGCAGTAAAGGTATTAACTGAATCCAGCGCAAGTGGTGAGGAATTCATAAATGAAGTAGCTAGTATCAGCAAAACTTCTCATGTAAACATTGTCTCACTTTTGGGATTTTGTTATGAGAAGCATAAAAGGGCACTCATATATGAATTCATGTCGAATGGTTCTTTGGATAAGTTCATCTACAAACAAGAATCTCCCAATAATGCTTTTTGTAGTTTGGATTGGAATACATTGTTTCAAATTACAATTGGTATTGCGCGAGGATTGGAATATTTGCATCAAGGGTGTAGTACAAGAATTTTACATCTTGATATTAAGCCTCAAAATATTCTTTTAGATGAAGATTTTTGTCCAAAAATTGCTGATTTTGGATTGGCAAAAATATACAAGAAGAAGGAGAGTATTGTATCTTTTCTAGGTACAAGAGGAACCCCTGGATACATTGCACCAGAAGTGTTCAGCCGAACCTTTGGTAAAGTTTCTCACAAATCTGATGTGTACAGTTTTGGTATGTTGATTCTTGAATTGGTGGGAGGCAGAAAGAACTACGACACTGGTGAATCACTTACTAGTGAGATGTATTTTCCAGATTGGATTTACAAGGATCTGGAGGAGCAAAATATGCTTGGACGGGATTTGGCCACTACTGAGGAAGAAAATGATATGATAAAGAAAATTACTTTGCCTGTGTTGTATGCTCCTAAAGTGTCTGTCTCGCAGTTTTCACGAATCTCCTATAGCATTACAGATGAGGAGGATTATGAAATTGTTGAGGAGTTTGTTTCCATCAAATAA 2790 0.41 MAAYLKSRLKNGIISICILVMSLGCAKSNDGEREYMLKLLNALKPTPSNWSNTTHMCHWTGVTCNDQSGRIEEIDLRDMSLTGTVPSGLNDSLTQLKYLILFNNSLSGPVPALANLTFLETMYLDNNNFNSIPHGCFHALTSLNWLSLTYNTKLPPWNFPTDLTAHSSQLQRLFLEGTNLMGSIPNISQFFPAMERLYLSNNNLSSIPEGCFYNLTDLTDLSLANNTNLPPWTFPLQLTHSSSLLNYLDLQATNLMGSLPSLSDFFPILMYVYFSNNHLPSSPKVASRTLLLSNNSLTGGLPESFGGSRIAILHLNNQKDEGFSGTIDVLSSMSDLSQVWLQWNSFTGPIPDLSRCASLQDLQLGHNQLTGVVPDSLIALANLNNFSLDYNYLQGPVPEIDPDDFDTVNLGVDTTNGFCHKDPGPCDQRVTILLEIAAEFKYPILLARTWKGNNPCKGWRSITCDDKSKIRMVNLSNLKLTGTISSAFANLTDLRELYLNGNNLTGEIPDGLTSLPQLELVNVSNNHLAGNIPKFSTKVKVFTAGNDFLQLPSNGSSDHRRPSRISTPLITATIAAAAGIGGLVLLVIVICNRKRCLSFLQRIMSKETGPFVDNEFEEFMKSYGSLMLRRYNYSEVKRMTNSFQDKLGRGGYGIVYKACLSDGCPVAVKVLTESSASGEEFINEVASISKTSHVNIVSLLGFCYEKHKRALIYEFMSNGSLDKFIYKQESPNNAFCSLDWNTLFQITIGIARGLEYLHQGCSTRILHLDIKPQNILLDEDFCPKIADFGLAKIYKKKESIVSFLGTRGTPGYIAPEVFSRTFGKVSHKSDVYSFGMLILELVGGRKNYDTGESLTSEMYFPDWIYKDLEEQNMLGRDLATTEEENDMIKKITLPVLYAPKVSVSQFSRISYSITDEEDYEIVEEFVSIK 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271909g00023 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 765 777 IPR008271 GO:0004672|GO:0006468
Stsc271909g00023 929 FunFam Leucine-rich repeat receptor-like kinase 428 552 - -
Stsc271909g00023 929 SMART serkin_6 641 907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271909g00023 929 SMART LRR_typ_2 491 515 IPR003591 -
Stsc271909g00023 929 SMART LRR_typ_2 116 139 IPR003591 -
Stsc271909g00023 929 SMART LRR_typ_2 215 236 IPR003591 -
Stsc271909g00023 929 SMART LRR_typ_2 356 379 IPR003591 -
Stsc271909g00023 929 SMART LRR_typ_2 191 214 IPR003591 -
Stsc271909g00023 929 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Stsc271909g00023 929 Gene3D Ribonuclease Inhibitor 33 142 IPR032675 -
Stsc271909g00023 929 Gene3D Ribonuclease Inhibitor 427 551 IPR032675 -
Stsc271909g00023 929 Pfam Leucine rich repeat 169 226 IPR001611 GO:0005515
Stsc271909g00023 929 Pfam Leucine rich repeat 469 528 IPR001611 GO:0005515
Stsc271909g00023 929 ProSiteProfiles Protein kinase domain profile. 641 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271909g00023 929 SUPERFAMILY Protein kinase-like (PK-like) 620 866 IPR011009 -
Stsc271909g00023 929 Gene3D Transferase(Phosphotransferase) domain 1 716 898 - -
Stsc271909g00023 929 FunFam Os07g0541700 protein 716 808 - -
Stsc271909g00023 929 Gene3D Phosphorylase Kinase; domain 1 614 715 - -
Stsc271909g00023 929 Gene3D Ribonuclease Inhibitor 158 408 IPR032675 -
Stsc271909g00023 929 Pfam Protein kinase domain 644 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271909g00023 929 SUPERFAMILY L domain-like 36 280 - -
Stsc271909g00023 929 Pfam Leucine rich repeat N-terminal domain 30 65 IPR013210 -
Stsc271909g00023 929 Pfam Leucine rich repeat N-terminal domain 430 465 IPR013210 -
Stsc271909g00023 929 ProSitePatterns Protein kinases ATP-binding region signature. 647 669 IPR017441 GO:0005524
Stsc271909g00023 929 ProSiteProfiles Leucine-rich repeat profile. 193 214 IPR001611 GO:0005515
Stsc271909g00023 929 SUPERFAMILY L domain-like 246 536 - -
Stsc271909g00023 929 FunFam serine/threonine-protein kinase PBS1-like 612 715 - -
Stsc271909g00023 929 PANTHER OSJNBA0070M12.3 PROTEIN 194 882 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271909g00023 Stsc-Chr271909 121605 124885 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271909g00023 573 898 Receptor kinase-like Gene Family AT1G66910 51.057 2.38e-101 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc271909g00023 Pkinase 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271909g00023 - K00924 aip:107635702 1117.45