Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271909g00022 ATGAGCTTGGGTTGTGTCAAGTCCGACGATGAAGGTGCATACATGTTGAAGCTTCTGAATGCACTCAAACCCACTCCCTCCAGCTGGTCCAACACCACCTACATGTGCGACTGGCCAGGGGTGAGTTGCAAGTTTCTAATTGGAAGGATTGAAGATATCGTGCTCCGTTCAATGTCGCTGACAGGAACGGTTCCTTCAGGCCTCAATGACTCCCTCACACACCTCACACATCTCGATCTCTCCAACAATAATCTGAGTGGGCCTGTTCCCTCTCTCGCCAACCTCACCTTCCTCCAAACGGTGATCCTCGACAACAACAACTTCAACTCCATCCCACATGCTTGCTTCCATGCTCTAACTAGTTTAAACACCTTAAGCTTGAGTAACAATACGAAGCTCCTACCATGGAACTTTCCTACCGATTTGACTGCTCACTCCTCCCAACTCCAATACCTCCACCTCTATTCTACAAATCTCATGGGATCCGTACCAAACATATCCCACTTCTTCCCAGCTATGCAATCTCTTTATCTCTCTAACAACAACCTCTCCTCCATCCCACAGGGTTGCTTCCACAACCTAACCAATTTGACTGCCATCTCTTTGGCCAATAACACCAACCTCCCACCATGGACTTTCCCTCTCCAATTGACTCATTCCTCGTTGCAACTCTCCTACCTCTTCCTGGAGGCTACAAATCTGATGGGATCCCTACCAAACTTATCTCATTTCTTCCCCAACTTGATAACTGTTTCTCTCTCCAACAACAACCTTACCTTCATCCCCCAAGGTTGCTTCCAGTCGAAAGATCTGAAAGTGCTCAATCTTAGTGCTACAAATGTGATGGGCTCACTAACAGAAATATTTCAGTCCAAGCCAAGTTTGCAGACTGTTGTTCTCTCCAACAATAACCTCTCTGGCTTCTTACCGGAGTCTAGAGAGTCCAAGATTGCCACTTTGCATCTTAACGACCAGAAGGGCAAAGGATTTTCGGGTCCAATTGATGTCATTTCAAACATGATCGACTTGTCTGAAGCGTGGCTTCAGGGGAACTCGTTTACAGGACCTATTCCCGACATGTCTCGTTGTACCGCCTTGCAAGATTTACAACTTGCGCACAATCGATTAACAGGTGTGGTTCCAGATTCTCTGATAAGTCTAAGTAGGGGTCAGGGGAACCTGCGTAGAGTTTCTTTGAACAACAACTTTTTGCAGGGTCCTATGCCTAACTTTGTCCTTTATGTCGATGGAGACGTGAATGTCGGTGATAACACCGCAAATGCCTTTTGTCGACAAGTTTTTGAGCCTTGTGACCCGAGAGTTACCACTTTGCTTGAAGTTGCTTCTGCATTTGGATATCCTTATTTGTTGGCGCGTTCATGGCCTGGGAATAATCCTTGTCATAATTGGAGTTTCGTCTCATGCAATGGAGGTATGATTACAACCGTGAATTTGACAAGGCTGAATTTGAATGGAACAATCTCACCTTTATTTGCTAACTTAACTCATTTGCAAAACTTGTATCTAAGTGGCAACAATTTAAACGGTTCTATACCCGAAAACTTGACATCTCTTCGTCAACTCAAGAATCTCGATGTCTCCAATAACAACTTATCAGGAAAAATCCCCAGTTTCTCAAGCGGAGTAAACCTGAATACTAAATACAATCCTTTGTTCGACATACAAAATCCTTTCATCGAGAGAAGAATTCCACATGCTTGGATCCCAGCCACGACAGCAGCAGCAGCAGGTATTGGAGGTCTTGTTCTCTTGGTTATAGTTATTTGTAACCGAAAGAGGTGTCTTAGCTTCTTACAGAGGATTATGTCCAAGGAAACAGGACCATTTGTTGATAATGAATTTGAAGAATTCATGAAAAGTTATGGATCGTTGATGCTAAGGAGATATAATTATTCTGAAGTGAAAAGGATGACAAATTCATTTCAAGATAAATTAGGAAGGGGAGGATATGGCATTGTATACAAAGCATGCTTAAGTGATGGTTGTCCTGTGGCAGTGAAGGTATTAACCGAATCCAGCGCAAGTGGGGAGGAATTCATAAATGAAGTAGCTAGTATCAGCAAAACTTCTCATGTCAACATTGTCTCACTTTTGGGATTTTGTTATGAGAAACATAAAAGGGCACTCATCTATGAATTCATGTCGAATGGTTTTTTGGATAAGTTCATCTACAAACAAGAATCTCCCAATAATGCTTTTTGTAGTTTGGATTGGAATACATTGTTTCAAATTACAATTGATATTGCAAGAGGATTAGAATATTTGCATCGAGGATATAGTACAAGAATTTTGCATCTTGATATTAAGCCTCAAAATATTCTTTTAGATGAAGATTTTTGTCCAAAAATTGCTGATTTCGGATTGGCGAAAATATGCAAGAAGAAGGAAAGTATTGTATCTTTTTTAGGTACAAGAGGAACTCCTGGGTACATTGCACCAGAAGTATTCAGCCGAACCTTCGGTAAAGTTTCAAACAAGTCTGATGTGTACAGTTTTGGTATGTTGATTCTTGAATTGATGGGAGGCAGAAAGAACTACGACACTGGTGAATCACTTACCAGTGAAATGTATTTTCCAGATTGGATTTACAAGGATCTGGAAGAGCAAAATATGCTTGGACGGGATTTGGCCACTACTGAGGAAGAAAATGATATGATAAAGAAAATTACTTTGGTGAGTTTATGGTGCATTCAAACAAGTCCATCAGATAGACCATCAATAAATAAAGTAGTGGAGATGTTAAAAGGGCCACTTCCATCGGTGCCATATCCTCCGAAACCTGTCTTATATGCTCCTCAAGTGTCTGTCTCGCAGTTTTCACGAATCTCCTATAGCATTACAGATGAGGAGGATTCTCAAATTGTTGAGGAGTTTGTTTCCATCAAATAA 2910 0.4158 MSLGCVKSDDEGAYMLKLLNALKPTPSSWSNTTYMCDWPGVSCKFLIGRIEDIVLRSMSLTGTVPSGLNDSLTHLTHLDLSNNNLSGPVPSLANLTFLQTVILDNNNFNSIPHACFHALTSLNTLSLSNNTKLLPWNFPTDLTAHSSQLQYLHLYSTNLMGSVPNISHFFPAMQSLYLSNNNLSSIPQGCFHNLTNLTAISLANNTNLPPWTFPLQLTHSSLQLSYLFLEATNLMGSLPNLSHFFPNLITVSLSNNNLTFIPQGCFQSKDLKVLNLSATNVMGSLTEIFQSKPSLQTVVLSNNNLSGFLPESRESKIATLHLNDQKGKGFSGPIDVISNMIDLSEAWLQGNSFTGPIPDMSRCTALQDLQLAHNRLTGVVPDSLISLSRGQGNLRRVSLNNNFLQGPMPNFVLYVDGDVNVGDNTANAFCRQVFEPCDPRVTTLLEVASAFGYPYLLARSWPGNNPCHNWSFVSCNGGMITTVNLTRLNLNGTISPLFANLTHLQNLYLSGNNLNGSIPENLTSLRQLKNLDVSNNNLSGKIPSFSSGVNLNTKYNPLFDIQNPFIERRIPHAWIPATTAAAAGIGGLVLLVIVICNRKRCLSFLQRIMSKETGPFVDNEFEEFMKSYGSLMLRRYNYSEVKRMTNSFQDKLGRGGYGIVYKACLSDGCPVAVKVLTESSASGEEFINEVASISKTSHVNIVSLLGFCYEKHKRALIYEFMSNGFLDKFIYKQESPNNAFCSLDWNTLFQITIDIARGLEYLHRGYSTRILHLDIKPQNILLDEDFCPKIADFGLAKICKKKESIVSFLGTRGTPGYIAPEVFSRTFGKVSNKSDVYSFGMLILELMGGRKNYDTGESLTSEMYFPDWIYKDLEEQNMLGRDLATTEEENDMIKKITLVSLWCIQTSPSDRPSINKVVEMLKGPLPSVPYPPKPVLYAPQVSVSQFSRISYSITDEEDSQIVEEFVSIK 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271909g00022 969 ProSitePatterns Protein kinases ATP-binding region signature. 652 674 IPR017441 GO:0005524
Stsc271909g00022 969 SUPERFAMILY Protein kinase-like (PK-like) 625 921 IPR011009 -
Stsc271909g00022 969 Pfam Protein kinase domain 649 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271909g00022 969 Gene3D Ribonuclease Inhibitor 223 416 IPR032675 -
Stsc271909g00022 969 ProSitePatterns Serine/Threonine protein kinases active-site signature. 770 782 IPR008271 GO:0004672|GO:0006468
Stsc271909g00022 969 SUPERFAMILY L domain-like 20 310 - -
Stsc271909g00022 969 FunFam serine/threonine-protein kinase PBS1-like 617 720 - -
Stsc271909g00022 969 Pfam Leucine rich repeat 148 205 IPR001611 GO:0005515
Stsc271909g00022 969 Pfam Leucine rich repeat 246 305 IPR001611 GO:0005515
Stsc271909g00022 969 SUPERFAMILY L domain-like 444 548 - -
Stsc271909g00022 969 SMART LRR_typ_2 194 215 IPR003591 -
Stsc271909g00022 969 SMART LRR_typ_2 95 118 IPR003591 -
Stsc271909g00022 969 SMART LRR_typ_2 501 525 IPR003591 -
Stsc271909g00022 969 SMART LRR_typ_2 170 193 IPR003591 -
Stsc271909g00022 969 SMART LRR_typ_2 363 386 IPR003591 -
Stsc271909g00022 969 SMART LRR_typ_2 72 94 IPR003591 -
Stsc271909g00022 969 SMART LRR_typ_2 245 268 IPR003591 -
Stsc271909g00022 969 FunFam PR5-like receptor kinase 721 930 - -
Stsc271909g00022 969 Gene3D Phosphorylase Kinase; domain 1 619 720 - -
Stsc271909g00022 969 FunFam Leucine-rich repeat receptor-like kinase 439 562 - -
Stsc271909g00022 969 ProSiteProfiles Leucine-rich repeat profile. 172 193 IPR001611 GO:0005515
Stsc271909g00022 969 ProSiteProfiles Protein kinase domain profile. 646 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271909g00022 969 PANTHER OSJNBA0070M12.3 PROTEIN 261 922 - -
Stsc271909g00022 969 ProSiteProfiles Leucine-rich repeat profile. 74 96 IPR001611 GO:0005515
Stsc271909g00022 969 SUPERFAMILY L domain-like 271 410 - -
Stsc271909g00022 969 SMART LRR_sd22_2 525 553 - -
Stsc271909g00022 969 SMART LRR_sd22_2 501 524 - -
Stsc271909g00022 969 SMART LRR_sd22_2 72 97 - -
Stsc271909g00022 969 Pfam Leucine Rich Repeat 74 95 IPR001611 GO:0005515
Stsc271909g00022 969 Gene3D Transferase(Phosphotransferase) domain 1 721 926 - -
Stsc271909g00022 969 ProSiteProfiles Leucine-rich repeat profile. 503 526 IPR001611 GO:0005515
Stsc271909g00022 969 Gene3D Ribonuclease Inhibitor 119 220 IPR032675 -
Stsc271909g00022 969 PRINTS Leucine-rich repeat signature 525 538 - -
Stsc271909g00022 969 PRINTS Leucine-rich repeat signature 75 88 - -
Stsc271909g00022 969 Gene3D Ribonuclease Inhibitor 439 562 IPR032675 -
Stsc271909g00022 969 Gene3D Ribonuclease Inhibitor 15 118 IPR032675 -
Stsc271909g00022 969 Pfam Leucine rich repeat N-terminal domain 442 476 IPR013210 -
Stsc271909g00022 969 Pfam Leucine rich repeat N-terminal domain 9 43 IPR013210 -
Stsc271909g00022 969 SMART serkin_6 646 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271909g00022 Stsc-Chr271909 111531 114870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271909g00022 578 954 Receptor kinase-like Gene Family AT1G66910 50.131 5.28e-118 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc271909g00022 Pkinase 7.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271909g00022 - K00924 aip:107635702 1446.03