Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271909g00012 ATGGCTGAAGTTGTTGAATACCGTGCAAATTCCAACACAAACACCCCTTCCACCCCACCATCTCTAAAGCTCTTTGGCATCAACATTCATCATCACAAGATCTCAAGAGATCAAAACACTACTTCTATGAATCAATCATCACCATCACCACCACCGAAATCTCAAGAAGATAATTCTTCTTTTGATGACCCTTTAAATAACTCATCATCAAGGGATGCAAGAAAATATGAGTGCCAATATTGTTTTAGAGAGTTTGCAAATTCACAAGCACTTGGTGGACACCAAAATGCACACAAGAAAGAAAGGCAGCTCCTCAAACGTGCTCAAATGCAAGCTGCACGTGGCTTTGTTGCTTCACATCACATTCATCAAAGCACAATCATGTCATCACAGCTGCCACATCTTCTACCTGTTGGTGCCGGTGTGCCGTCGCCGCCACCACCTTCTTCTCATGCATCTTCATGGCTGTTTCATGCAGGTGGTGGCGCACCCAGCTTTGGCGATAATGCATATCATTCAGGAGGAATCTTTGTGGCTCCTCCTGGAAGACGTGTCTATGGTGGTGGAGGCGGCGACAACCAATTTGAGGGATCTAACTTATTTAAAACAAGTTGGTTACCCGATGGCCGTAATCACCACCACCATTGTCATTTGTCAGGATTTGATGCCGTTGACAGTGACAAGATTGATGGTGGCGATCGATTTAATAGTAGTGAAGAAGGGTTCAAATTGAACTTGCATCTTAGTTTATAA 753 0.4382 MAEVVEYRANSNTNTPSTPPSLKLFGINIHHHKISRDQNTTSMNQSSPSPPPKSQEDNSSFDDPLNNSSSRDARKYECQYCFREFANSQALGGHQNAHKKERQLLKRAQMQAARGFVASHHIHQSTIMSSQLPHLLPVGAGVPSPPPPSSHASSWLFHAGGGAPSFGDNAYHSGGIFVAPPGRRVYGGGGGDNQFEGSNLFKTSWLPDGRNHHHHCHLSGFDAVDSDKIDGGDRFNSSEEGFKLNLHLSL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271909g00012 250 SUPERFAMILY beta-beta-alpha zinc fingers 73 103 IPR036236 -
Stsc271909g00012 250 MobiDBLite consensus disorder prediction 1 70 - -
Stsc271909g00012 250 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Stsc271909g00012 250 Gene3D Classic Zinc Finger 53 130 - -
Stsc271909g00012 250 MobiDBLite consensus disorder prediction 7 22 - -
Stsc271909g00012 250 PANTHER ZINC FINGER PROTEIN 5 10 250 IPR044299 GO:0010090
Stsc271909g00012 250 MobiDBLite consensus disorder prediction 38 70 - -
Stsc271909g00012 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271909g00012 Stsc-Chr271909 61237 61989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271909g00012 21 147 C2H2 Transcription Factor Family AT1G67030 51.908 2.13e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271909g00012 - - aip:107638204 286.96