Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271909g00004 ATGCATAAACTGCTGGAAGCCCTGACTCCAACTCCAACTGGTTGGTCCAAAACAACCTCCCACTGCAACTGGACAGGCATTACCTGTAGTGGTATCAGCTGGAAGTGGGTCACCGCCATTGACCTCAGAGGATACTCACTCACCGGAATATTGCCCTCCAATCTCAACTCCCTCCATAATCTCATGGATCTTGACTTCGCTTATAATAATCTAACGGGGCCTCTTCCCTCACTCGCCAACCTCACCTTCCTCCAGTATGTTTACCTCGAATTCAACAACTTCACCTCCATTCCAGACGGCACCTTCCATGGTTTATTCAACTTGGAACGCCTCTCCATGGGAAACAACATCAACCTCGCGCCATGGACCTTTCCCGCTAATAATTTTAATTTCACTCCTGATTACTCTGATCGTCCTCTAGAGGTTATGTGGCTTGATGCCACGAACTTGGAGGGTAGCTTGCCGGATACGTTCCAGTTCTTTCCCAGACTGCGGTATCTTTCTCTCAATGACAACAACCTCACCGGGATCCTCCCCAACTCTCTAGCTCAAACTGCAGTTGAACAATTACTTCTTCAAAACCAGAAAGTTGGGTTTGAAGGGTCACTGCATGTACTTTCCACCATGACCCACTTGACAAAGATATACCTTCAAAATAACAAGTTCAGTGGTTCAATCCCAAACTTGTCAAATTCTCCAAATTTGGTAACACTCAGACTTGATAACAACTTCTTAACCGGTGTCGTTCCACCTTCTCTCGCCACTCTTCCCAACTTGGAGTGCCTTTATTTGAACAAAAACATGCTAAGGGCTCCAATACCTAACTTTGGCAGCCATATCAGAGATATCAGCTTATATCCAATCAACAGATTGTGTCCGGAGTCTGCTGGACTTTGCGATCAGATGGTCTTGCTTGACATTGCAGAAGCCTACGGTAATCCAGTAAAGTTAACCCATTCATGGAAATGGGACAACCCTAATTGTCAAAATTGGGACTTCATTGTGTGCCGAGGACAAGATAGGAAGGCGGTGGTTGTGAATTTGGAAAGGCAAGGCTTGATGGGGATGATCACACCTGAGTTTGCTAATTTAACTGATTTGAAGGCTTTGAATCTGAGTGGAAATAATTTGACAGGTTCAATACCTTCAAGCTTTGTAATGTTGTCCCAACTCGAGTCTCTGGATTTGTCCTATAACAACCTATCTGGAGAGATCCCTGAATTTCCTACCAGAGTGAAGTTGAATATTATTGGTAATCCTTTGCTTCAAAATTCCCAAGGACATTCAACATTTCCAATTGTTTGGGTAGCAGGTGCATTAGCAATAACAATCATTGGATTTGTAATGTTTATTGTTATTGTTTATAATCGAAAAAGTTCTCTTAGTATTGTACCACAAGGATTCTTCAAGAGATTAGCAAGAATGCATTCAGACCACAATGACGAGGATTTCATGAAAAGATACAGTTTTTTAGTACCGAAGCACTACAGTGATTCAGAGATTAAAAAAATGACAAAGTCATTTCGGCATAAATTAGGTCAAGGAGGTTTTGGTGTTGTGTACAAAGGAACTTTACCTAATGGTCGTCATGTGGCGATAAAAGTAATTAATGAATCAAAGAGAAGTAGTGGAGAAGAATTCATGAATGAAGTTGTTAGTATTAGTAGAACATCTCATATCAATATAGTTTCTTTCTTGGGATTTTGTTATGAAAAAAATAAAAGGGCACTTATCTATGAATTTATGCCGAATGGTTCACTAGATAAGTTCATCATCAAGAGAAAAGAATCTTCAAGTATTGATTGTAATTTGGATTTAAACACATTATACAAAATTACAATTGGCATTGCAAAAGGATTAGAATATCTACATCGAGGATGTAGTACAAGAATTGTTCATCTTGATATCAAACCTCAAAACATTCTTTTGGATGAGGATTTTTGTCCTAAAATTTCTGATTTTGGGCTAGCTAAATTATGCAAGAGAAAAGAGAGCACAATATCTCTATTGGGCGCTAGAGGAACCATCGGATATATTGCTCCAGAAATTATAACTCGAAGGTATGGTGGAGTTTCTCACAAATCTGATGTGTATAGTTATGGTATGCTAACTCTTGAAATGTTAGGAGAAAGAGATTGTGAATATAGAAAATCACATACCAGCGAAATCTTTTTTCCTGAAATGATTTATGAAAATCTTGTGCGAGATAATATCCATTCAGGTTATTCTTCAATCATTGTAGAAGAAGACGCTGAAATATTAAAGAAGATGACTATGGTGAGTCTATGGTGTATTCAAACAATTCCAAAAAATAGGCCATGTATTAGTAAGGTAATAGAAATGTTAGAAGGACCACTTGAATCAATGCCATTTCCTCCAAAGCCCACCTCGTATTCTCCTAACATTCTTGTACCTTAA 2418 0.3912 MHKLLEALTPTPTGWSKTTSHCNWTGITCSGISWKWVTAIDLRGYSLTGILPSNLNSLHNLMDLDFAYNNLTGPLPSLANLTFLQYVYLEFNNFTSIPDGTFHGLFNLERLSMGNNINLAPWTFPANNFNFTPDYSDRPLEVMWLDATNLEGSLPDTFQFFPRLRYLSLNDNNLTGILPNSLAQTAVEQLLLQNQKVGFEGSLHVLSTMTHLTKIYLQNNKFSGSIPNLSNSPNLVTLRLDNNFLTGVVPPSLATLPNLECLYLNKNMLRAPIPNFGSHIRDISLYPINRLCPESAGLCDQMVLLDIAEAYGNPVKLTHSWKWDNPNCQNWDFIVCRGQDRKAVVVNLERQGLMGMITPEFANLTDLKALNLSGNNLTGSIPSSFVMLSQLESLDLSYNNLSGEIPEFPTRVKLNIIGNPLLQNSQGHSTFPIVWVAGALAITIIGFVMFIVIVYNRKSSLSIVPQGFFKRLARMHSDHNDEDFMKRYSFLVPKHYSDSEIKKMTKSFRHKLGQGGFGVVYKGTLPNGRHVAIKVINESKRSSGEEFMNEVVSISRTSHINIVSFLGFCYEKNKRALIYEFMPNGSLDKFIIKRKESSSIDCNLDLNTLYKITIGIAKGLEYLHRGCSTRIVHLDIKPQNILLDEDFCPKISDFGLAKLCKRKESTISLLGARGTIGYIAPEIITRRYGGVSHKSDVYSYGMLTLEMLGERDCEYRKSHTSEIFFPEMIYENLVRDNIHSGYSSIIVEEDAEILKKMTMVSLWCIQTIPKNRPCISKVIEMLEGPLESMPFPPKPTSYSPNILVP 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271909g00004 805 Gene3D Ribonuclease Inhibitor 299 426 IPR032675 -
Stsc271909g00004 805 SUPERFAMILY Protein kinase-like (PK-like) 488 782 IPR011009 -
Stsc271909g00004 805 PANTHER OSJNBA0070M12.3 PROTEIN 1 786 - -
Stsc271909g00004 805 Gene3D Transferase(Phosphotransferase) domain 1 582 789 - -
Stsc271909g00004 805 SUPERFAMILY L domain-like 15 424 - -
Stsc271909g00004 805 ProSiteProfiles Protein kinase domain profile. 506 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271909g00004 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Stsc271909g00004 805 Pfam Leucine rich repeat N-terminal domain 304 336 IPR013210 -
Stsc271909g00004 805 Pfam Leucine rich repeat N-terminal domain 10 30 IPR013210 -
Stsc271909g00004 805 SMART LRR_typ_2 388 419 IPR003591 -
Stsc271909g00004 805 SMART LRR_typ_2 209 232 IPR003591 -
Stsc271909g00004 805 SMART LRR_typ_2 81 104 IPR003591 -
Stsc271909g00004 805 SMART LRR_typ_2 256 279 IPR003591 -
Stsc271909g00004 805 SMART LRR_typ_2 161 184 IPR003591 -
Stsc271909g00004 805 SMART LRR_typ_2 364 387 IPR003591 -
Stsc271909g00004 805 Gene3D Ribonuclease Inhibitor 3 291 IPR032675 -
Stsc271909g00004 805 Gene3D Phosphorylase Kinase; domain 1 478 581 - -
Stsc271909g00004 805 PRINTS Leucine-rich repeat signature 367 380 - -
Stsc271909g00004 805 PRINTS Leucine-rich repeat signature 388 401 - -
Stsc271909g00004 805 Pfam Leucine rich repeat 361 401 IPR001611 GO:0005515
Stsc271909g00004 805 FunFam Leucine-rich repeat receptor-like kinase 300 425 - -
Stsc271909g00004 805 Pfam Leucine Rich Repeat 163 182 IPR001611 GO:0005515
Stsc271909g00004 805 ProSitePatterns Protein kinases ATP-binding region signature. 512 534 IPR017441 GO:0005524
Stsc271909g00004 805 FunFam serine/threonine-protein kinase PBS1-like 474 581 - -
Stsc271909g00004 805 ProSiteProfiles Leucine-rich repeat profile. 390 412 IPR001611 GO:0005515
Stsc271909g00004 805 Pfam Protein kinase domain 510 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271909g00004 805 FunFam PR5-like receptor kinase 582 793 - -
Stsc271909g00004 805 SMART serkin_6 506 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271909g00004 Stsc-Chr271909 24986 27528 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271909g00004 494 805 Receptor kinase-like Gene Family AT5G38280 56.962 3.91e-118 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc271909g00004 Pkinase 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271909g00004 - K00924 csav:115712166 697.967