Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271909g00002 ATGGTTTTGCTTGATATTGCACAAGCATTTCAGAATCCAATCCAGTTGGCCAGTTCATGGAGATGGAACAACACTAATTGCCAACATTGGAGTTTCATTGTGTGCCAGCAAGGGAAGGTTGTTGCTGTCAACTTGGCAAGCCAAGGTTTAACAGGGTTGATCCCTTCTTCATTTGCTAATTTAAGTGATTTGAAGAACTTGAATTTGAGTGGAAATAATTTGAGGGATTCAATACCCTACAGCTTGACAACATTGCTTCGCCTAGAGTCTCTGGATTTGTCTTATAACAACTTATCTGGAGAGGTTCCTATATTTCCAACAAGAGTGAAGCTCAATATCACCTACAATCCCTTGCTTCAAATATCTCAAAGACATCCACCAGTCATCCCAATTCCTTGGATAGCAGCACATGAAGATGATGATGATGGTGTAGTGATGTCTGATCTGTTAGAAGCCCTGACTCCAACTCCGGAAGGCTGGTCTAAAAACACCTCCTTCTGCAATTGGACAGGCATTACATGTGGCGGCGGCTGCGGCTCCATGAGAGTCACAGCCATCCAACTCGATGGATACTCACTCACCGGAATATTGCCCTCCAATCTCAACTCTCTCTCCTGCCTCACCCATCTTGACCTCTCTAATAATCATTTAACAGGGCCTATGCCTTCACTCGCCAATCTAGTCCTCCTCACCCATGTCAATCTGGAACTCAACAACTTCACTTCCCTCCCTGACGCCGCCTTTCATGGTCTCTTCAATTTGGAATTCCTCTCCTTGGGAAACAACTTCAACCTCCAGCCATGGACGTTTCCCACTAGTTTAATTTTACCTGATGATCATCACCTATTCGGTACTACTGTTCCACCTCTGGACACCATCTTCCTTTCAGCCACAAACATGGAGGGTAACCTGCCGGATATATTCAACTTTTTTCCGAAATTTAGACGTCTTGATCTCAGTAACAATAACTTCACTGGGATCCTCCCCAAATCGTTAGACCGAACTGAAATTGAATTCTTGCTTCTTCAACATCAGAAACTAGGATTTGAGGGTTCTATACATGTACTTTCCACCATGACTCACTTGGTTGGTGTACAACTTCAAAATAACAAGCTCACCGGTCCCATTCCTAACTTCTCAAATTCTCACCACTATTTAACTAGTCTCAGGATCGATAACAACTTCTTAACCGGTGTGATTCCACCTTCTCTTACGAATCTCCATAACTTGCAAGAACTTACTTTGGTTAACAACATCCTAAGGGGTCCAATACCTAGCTTTGTCAAGACTCTCCCATACAGTAGTTGGCATCCAATCAATAGATTGTGCCCGGAGTCTGATGGACTTTGTGATCAGATGATTTTGATTGACATTGCAGAAGCCTTTGGGAATCCAGTTCAGTTGACCAATTCATGGAAATGGGACAACCCTAATTGCCAAAATTGGAGTTTCATTGTGTGCCGACCACAAGATAGGAAGGTGGTGGTTGTGAATTTGGAAAGGCAAGGCTTGACAGGGATGATCACACCTGAGTTTGCTAATTTAAGTGATTTGAAGACTTTGAATCTGAGTGGAAATAATTTGACAGGTTCAATACCTTCAAGCTTGGTAACTTTGTCTCAACTCGAGTCTCTGGATTTGTCCTATAACAACCTATCCGGAGAGATCCCTGTATTTCCTACAAGACTGAAGTTGAATACCACTGGTAATCCTTTGCTTCGAAATTCTCAACGACATTCCACATTCCCAATTCTTTGGGTAGCAGGTGCATTAGCAATAACAATCCTTGGATTTTTAATGTTCATTGTGATTGTTTATGACCGAAAGAGGTGTTTTAGTTTAGTACCAAAAGGATTTTTCAACAAAGCAAGAACCTATTCATACTATGATAATGCCGAGGATTTCATGAAAGCATATAGTTTTCTTGCACCAAAGCACTACAGTTATTCAGAGATTAAAAAAATGACAAAGTCATTTCGACATAAATTAGGTCAAGGAAGATTTGGTGCTGTGTACAAAGGAACTTTACCTAATGGTCGTTATGTGGCGATAAAAGTAATAAATGAATTAAAGGCAAGTACGGGAGAAGAGTTCATGAATGAAGTTGTCAGCATTAGTAGAACATCACATGTTAATATAGTTTCACTTTTGGGGTTTAGTTATCAAAAAAATAAAAAGGCACTTATCTATGAATTTATGCCAAATGGTTCTTTAGATAAGTTCATCCTCAATAGAAAGGAAGCTTCAAATATTAATTGCAATTTGGATTTGAATACATTATACAAAATTGCAATTGGTATTGCTCAAGGATTAGAATATTTGCACGGAGGATGTAATACAAGAATTGTCCATCTTGATATCAAACCCCAAAACATTCTTTTGGATGAAGATTTTTGTCCTAAAATTTCTGATTTTGGACTAGCTAAATTGTGCAAGAGAAATGAAAGCGTAATATCTTTATTGGGTACCAGAGGAACCATCGGATATATTGCTCCAGAAATTTTAAGTCGAAGATATGGTGGAGTTTCTCACAAATCTAATGTATATAGTTATGGCATGTTAATTCTTGAAATAATCGGAGGAAGAAATCAAAAATATAGAAAATCAATAGTTAGTGAAATTTATTTTCCAGAAATGATTTATAAGAGTCTTGCTCAAGATATCATCCATTCAGATTATTCTCCATCAAGTGAAGAAGAAGCTGAGATTTTAAAGAAGATGACAATGGTGAGTCTTTGGTGCATTCAAACAGTCCCAACAAACAGGCCATGCATTAGTAAGGTAATAGAAATGTTAGAAGGACCACTACTATCAGTGCCGTTTCCTCCGATGCCCACCTCGTATTCTCCTAACATTTTTGTACCATTGCAATTTTCACAAGAATCTTCCAGTGGTATATATGTAACAGATTCAATATCGAAACAGGAAGATATACCATAA 2940 0.3895 MVLLDIAQAFQNPIQLASSWRWNNTNCQHWSFIVCQQGKVVAVNLASQGLTGLIPSSFANLSDLKNLNLSGNNLRDSIPYSLTTLLRLESLDLSYNNLSGEVPIFPTRVKLNITYNPLLQISQRHPPVIPIPWIAAHEDDDDGVVMSDLLEALTPTPEGWSKNTSFCNWTGITCGGGCGSMRVTAIQLDGYSLTGILPSNLNSLSCLTHLDLSNNHLTGPMPSLANLVLLTHVNLELNNFTSLPDAAFHGLFNLEFLSLGNNFNLQPWTFPTSLILPDDHHLFGTTVPPLDTIFLSATNMEGNLPDIFNFFPKFRRLDLSNNNFTGILPKSLDRTEIEFLLLQHQKLGFEGSIHVLSTMTHLVGVQLQNNKLTGPIPNFSNSHHYLTSLRIDNNFLTGVIPPSLTNLHNLQELTLVNNILRGPIPSFVKTLPYSSWHPINRLCPESDGLCDQMILIDIAEAFGNPVQLTNSWKWDNPNCQNWSFIVCRPQDRKVVVVNLERQGLTGMITPEFANLSDLKTLNLSGNNLTGSIPSSLVTLSQLESLDLSYNNLSGEIPVFPTRLKLNTTGNPLLRNSQRHSTFPILWVAGALAITILGFLMFIVIVYDRKRCFSLVPKGFFNKARTYSYYDNAEDFMKAYSFLAPKHYSYSEIKKMTKSFRHKLGQGRFGAVYKGTLPNGRYVAIKVINELKASTGEEFMNEVVSISRTSHVNIVSLLGFSYQKNKKALIYEFMPNGSLDKFILNRKEASNINCNLDLNTLYKIAIGIAQGLEYLHGGCNTRIVHLDIKPQNILLDEDFCPKISDFGLAKLCKRNESVISLLGTRGTIGYIAPEILSRRYGGVSHKSNVYSYGMLILEIIGGRNQKYRKSIVSEIYFPEMIYKSLAQDIIHSDYSPSSEEEAEILKKMTMVSLWCIQTVPTNRPCISKVIEMLEGPLLSVPFPPMPTSYSPNIFVPLQFSQESSSGIYVTDSISKQEDIP 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271909g00002 979 FunFam Leucine-rich repeat receptor-like kinase 451 576 - -
Stsc271909g00002 979 Gene3D Transferase(Phosphotransferase) domain 1 733 937 - -
Stsc271909g00002 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Stsc271909g00002 979 SUPERFAMILY L domain-like 453 562 - -
Stsc271909g00002 979 SUPERFAMILY Protein kinase-like (PK-like) 638 932 IPR011009 -
Stsc271909g00002 979 Pfam Leucine Rich Repeat 386 407 IPR001611 GO:0005515
Stsc271909g00002 979 Pfam Leucine Rich Repeat 315 333 IPR001611 GO:0005515
Stsc271909g00002 979 ProSitePatterns Protein kinases ATP-binding region signature. 663 685 IPR017441 GO:0005524
Stsc271909g00002 979 SMART LRR_typ_2 204 226 IPR003591 -
Stsc271909g00002 979 SMART LRR_typ_2 311 334 IPR003591 -
Stsc271909g00002 979 SMART LRR_typ_2 227 250 IPR003591 -
Stsc271909g00002 979 SMART LRR_typ_2 515 539 IPR003591 -
Stsc271909g00002 979 SMART LRR_typ_2 61 85 IPR003591 -
Stsc271909g00002 979 FunFam PR5-like receptor kinase 733 942 - -
Stsc271909g00002 979 ProSiteProfiles Leucine-rich repeat profile. 206 228 IPR001611 GO:0005515
Stsc271909g00002 979 SUPERFAMILY L domain-like 158 432 - -
Stsc271909g00002 979 Pfam Leucine Rich repeat 205 219 IPR001611 GO:0005515
Stsc271909g00002 979 PRINTS Leucine-rich repeat signature 207 220 - -
Stsc271909g00002 979 PRINTS Leucine-rich repeat signature 539 552 - -
Stsc271909g00002 979 SMART serkin_6 657 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271909g00002 979 Pfam Leucine rich repeat 495 552 IPR001611 GO:0005515
Stsc271909g00002 979 Pfam Leucine rich repeat 43 98 IPR001611 GO:0005515
Stsc271909g00002 979 Pfam Leucine rich repeat N-terminal domain 3 35 IPR013210 -
Stsc271909g00002 979 Pfam Leucine rich repeat N-terminal domain 145 174 IPR013210 -
Stsc271909g00002 979 Pfam Leucine rich repeat N-terminal domain 455 487 IPR013210 -
Stsc271909g00002 979 ProSiteProfiles Leucine-rich repeat profile. 541 563 IPR001611 GO:0005515
Stsc271909g00002 979 Gene3D Phosphorylase Kinase; domain 1 629 732 - -
Stsc271909g00002 979 ProSiteProfiles Protein kinase domain profile. 657 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271909g00002 979 Gene3D Ribonuclease Inhibitor 147 447 IPR032675 -
Stsc271909g00002 979 ProSiteProfiles Leucine-rich repeat profile. 517 540 IPR001611 GO:0005515
Stsc271909g00002 979 FunFam Leucine-rich repeat receptor-like kinase 1 122 - -
Stsc271909g00002 979 SUPERFAMILY L domain-like 2 115 - -
Stsc271909g00002 979 Pfam Protein kinase domain 661 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271909g00002 979 PANTHER OSJNBA0070M12.3 PROTEIN 135 933 - -
Stsc271909g00002 979 Gene3D Ribonuclease Inhibitor 450 577 IPR032675 -
Stsc271909g00002 979 Gene3D Ribonuclease Inhibitor 1 122 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271909g00002 Stsc-Chr271909 13672 19298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271909g00002 619 963 Receptor kinase-like Gene Family AT5G38260 52.707 2.65e-114 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc271909g00002 Pkinase 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271909g00002 - K00924 csav:115712166 721.079