Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271909g00001 ATGCTTGATACCCAAGGCTACCTTGTGTTGTTCCTTCTATGGTTCATCTCCACCATTACAATCAAATCTTTTTTGTTCAAAAAGTCCCAAAGTCTTAGACTCCCACCAGGTCCCCCAATTTCATTGCCACTTCTCGGTCACGCGCCTTATCTCCGATCACTCCTTCACCAAGCTTTATACAAGCTATCACTGCGCTATGGACCCCTCATTCACGTTCTCATCGGTTCCAAGCACGTTGTGGTTGCTTCCTCAGCAGAAATGGCGAAGCAGATTCTCAAGACCAATGAGGAATCCTTTTGCAACCGTCCGATCATGATCGCCAGCGAGAGCTTGACGTACGGCGCCGCCGACTACTTCTTCATTCCGTACGGGACATACTGGAGGTTCCTTAAGAAGCTCTGCATGACAGAGCTTCTTAGCGGGAAAACCCTTGAACACTTCGTCGGCATTCGCCAGGACGAAGTGGAGGCGTTTCTGAGGAACATTCTAGAAAGATCTAAGAGTGGGAAGGCGATGGAGATGAGGCAGGAGCTGATAAGGCACACGAACAACATAATCTCGAGGATGACGATGGGGAAGAAGAGCATCAAGAACGACGACGAGGTTGCGAGGCTGAGGAAGGTGATTAGGGAGGTTGGGGAGCTTCTTGGGGCGTTTAATTTGGGGGATGTAATTGGGTTCATGAAGCCTCTTGATGTTCAAGGGTATGGGAAGAAGAACTGGGAAACGCATCATGAATTGGATGTGATGATGGAGAAGGTTTTGAAGGAGCATGAAGATGCAAGATCAATGTCTGATTATGGTGACAGAAAGAAGGACCTCTTTGACATTCTCTTGAACCTCATTCAAGCTGATGGCGATAATAAACTCACCAGAGAAAGTGCCAAAGCCTTTGCCCTCGACATGTTCATCGCCGGGACAAATGGGCCAGCAAGTGTGTTAGAATGGTCACTAGCAGAGCTGATAAGGAACCCACACGTATTAAAAAAAGCAAGACAAGAAATCGATTCTGTTGTTGGCAAGGACAGATTAGTAAAAGAATCAGACATACCGAATCTTCATTATCTCCAAGCAGTAGTCAAAGAAACTCTCAGGCTTCACCCACCAACACCAATCTTCGCAAGAGAAGCCTTAAGAACCTGCCAACTCGAAGGCTATGACATTCCTCAGCACTCCAAGATCCTTATCAATGCTTGGGCCATCGGAAGGGATCCGAATCACTGGGACAACGCCCTCGAGTACCGCCCGGAGAGGTTCTTGCAAACAGAGGAAGAACCTGGGAAGGGTAAAATTGATGTGAGGGGACAATACTATCAGTTATTGCCATTTGGAAGTGGAAGAAGAAGCTGCCCTGGCGCCTCGCTTGCGTTGCTTGTTATCCAAGGAACACTGGCGAGTTTGATTCAGTGCTTTGATTGGGTTGTTAATGATGGGGAGAATAATGAGGTTGATATGTCTGAGGAAGGAAGAGTAACTGTGTTTATGGCAAAACCATTAAAGTGTAAGCCTGTTGCTCGTTTTGTTCCATTCTCATCGGCATGA 1542 0.4708 MLDTQGYLVLFLLWFISTITIKSFLFKKSQSLRLPPGPPISLPLLGHAPYLRSLLHQALYKLSLRYGPLIHVLIGSKHVVVASSAEMAKQILKTNEESFCNRPIMIASESLTYGAADYFFIPYGTYWRFLKKLCMTELLSGKTLEHFVGIRQDEVEAFLRNILERSKSGKAMEMRQELIRHTNNIISRMTMGKKSIKNDDEVARLRKVIREVGELLGAFNLGDVIGFMKPLDVQGYGKKNWETHHELDVMMEKVLKEHEDARSMSDYGDRKKDLFDILLNLIQADGDNKLTRESAKAFALDMFIAGTNGPASVLEWSLAELIRNPHVLKKARQEIDSVVGKDRLVKESDIPNLHYLQAVVKETLRLHPPTPIFAREALRTCQLEGYDIPQHSKILINAWAIGRDPNHWDNALEYRPERFLQTEEEPGKGKIDVRGQYYQLLPFGSGRRSCPGASLALLVIQGTLASLIQCFDWVVNDGENNEVDMSEEGRVTVFMAKPLKCKPVARFVPFSSA 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271909g00001 513 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271909g00001 513 PRINTS E-class P450 group I signature 314 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271909g00001 513 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271909g00001 513 PRINTS E-class P450 group I signature 440 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271909g00001 513 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271909g00001 513 PRINTS E-class P450 group I signature 294 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271909g00001 513 PRINTS E-class P450 group I signature 450 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271909g00001 513 PRINTS E-class P450 group I signature 87 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271909g00001 513 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271909g00001 513 SUPERFAMILY Cytochrome P450 35 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271909g00001 513 Pfam Cytochrome P450 35 493 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271909g00001 513 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 443 452 IPR017972 GO:0005506|GO:0016705
Stsc271909g00001 513 FunFam Cytochrome P450 family protein 26 501 - -
Stsc271909g00001 513 PRINTS P450 superfamily signature 441 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271909g00001 513 PRINTS P450 superfamily signature 450 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271909g00001 513 PRINTS P450 superfamily signature 305 322 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271909g00001 513 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271909g00001 513 PANTHER CYTOCHROME P450 98A9 13 506 - -
Stsc271909g00001 513 CDD CYP93 67 503 - -
Stsc271909g00001 513 Gene3D Cytochrome P450 25 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271909g00001 Stsc-Chr271909 1099 4162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271909g00001 1 506 Cytochrome P450 AT5G06900 40.864 1.16e-138 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271909g00001 K24188 K15814 gmx:100037459 841.647