Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271908g00008 ATGGCTCTTGGCGGATACATCATTTCAAGAGATCGCATTCCCAGTTGGTGGATATGGGGTTTTTGGATTTCTCCTTTGATGTATGCACAAAACTCAGCTTCCGTAAATGAGTTCCTTGGGCATTCCTGGGATAAGACAGTAGGAAATCAGATTACCAACTATCCCTTGGGTAAGGCAGTATTGAAACAGCGAAGTTTGTATCAAGAGAGCTATTGGTATTGGATTGGTCTTGGAGCAATGGTTGGATATACAATTTTGTTCAACACATTATTTACTATCTTCTTAGCTTACCTTAATCCTTTGGGAAAACAACAAGCTGTAGTTTCAAAGAGTGAGCTACAAGAAAGAGAAAAGAGAAGGAAAGGTGAAAGTGTCGTTGTTGAGTTGAGAGAGTACTTGCAGCATTCAGCATCCAGTGGAAAGCATTTTAAGCAAAGAGGAATGGTTCTCCCATTTCAACCTCTTTCCATGGCTTTCAGCAATATCAATTACTATGTGGATGTCCCTTTGGAACTGAAACAACAAGGGATACTAGAAGAAAGGCTGCAGTTGCTTGTTAATGTTACTGGAGCTTTTAGGCCTGGAGTGTTGACAGCATTGGTTGGAGTAAGCGGGGCTGGAAAAACCACGCTAATGGATGTCTTGGCTGGAAGAAAAACTGGCGGTGTTATAGAAGGGAACATATACATATCTGGTTATCCCAAAAGCCAAGACAGTTTTGCAAGAATTTCTGGTTATTGTGAGCAGACTGATGTTCATTCCCCTTGCTTGACTGTCTGGGAGTCTTTATTGTTCTCTGCTTGGCTCCGGTTATCTTCAGATGTTGACTTTGAAACGCAAAAGGCCTTCGTTGAGGAGGTAATGGAGCTGGTGGAGCTCACTCCATTGAAAGGAGCATTAGTTGGTCTACCTGGAATTGATGGTTTGTCAACAGAACAACGAAAAAGGTTAACAATAGCAGTTGAACTGGTTGCAAACCCATCTATAGTTTTCATGGATGAGCCCACTTCTGGATTGGATGCCAGGGCTGCAGCCATTGTAATGAGAACTGTTAGGAATATAGTGAATACTGGCCGAACAATCGTGTGCACAATTCATCAACCGAGTATAGACATATTTGAATCGTTTGATGAGCTTCTGTTTATGAAGCGTGGAGGAGAGCTCATATATGCTGGTCCACTTGGCCCTAAATCTAGTGAGCTTATCAATTATTTCGAGGCAGTGGATGGGGTTCCGAAGATCAGGTCCGGGTATAACCCTGCAACATGGATGTTAGAGGTTACTTCTTCAACAGAAGAAAACCGTTTGGGAGTGGACTTTGCAGAAATATACCGAAGATCAAGTTTATATCAGTATAACAAAGAATTGGTTGAAAGCTTGAGCAGGCCGAGCAATAATTCAAAAGAGTTGCATTTTCCAACCAAATATTGTCGGTCATATTTTGATCAGTTCTTAACTTGTCTTTGGAAGCAAAACCTATCTTACTGGCGTAACCCGCACTACACTGCTGTTCGCTTCTTTTACACTGTCATCATCTCCTTGATGCTGGGAACAATATGCTGGAGATTTGCCGTTCAACCGGTTGTTTCGGTTGAAAGATTTGTTTCATACAGAGAAAGAGCTGCAGGGATGTATTCGGCCTTACCATTTGCTTTTGCTCAGGTTATTATTGAGTTTCCTTATGTATTCGCACAGGCTATGATATACTCCACAATATTCTATTCTATGGCTTCCTTTGTCTGGAGTGTTGATAGGTTCATATGGTACTTGTTCTTCATGTATGTTACTATGTTGTATTTTACCTTCTATGGAATGATGACAACGGCTGTCACACCAAATCATAATGTTGCTGCCATCATCGCTGCTCCATTTTATATGCTGTGGAACCTCTTCAGTGGTTTTATGATTCCCCATAAGAGAATCCCTGTTTGGTGGAGATGGTATTACTGGGCAAACCCTGTAGCCTGGAGTCTTTATGGTCTCCTGACTTCACAATATGGGGGTGATGAAAAACCAGTGAAACTGTCTAATGGGAATTCCATGGCTATCTCGCAAGTACTGAGAGTGGTGTTTGGGTACAGACATGATTTCTTGTGCGTTGCTGCTATTATGGTTGCTGGCTTCTGCGTATTTTTTGCAATAATATTTGCCTTTGCAATTAAATCCTTCAATTTCCAAAGGAGATGA 2187 0.4156 MALGGYIISRDRIPSWWIWGFWISPLMYAQNSASVNEFLGHSWDKTVGNQITNYPLGKAVLKQRSLYQESYWYWIGLGAMVGYTILFNTLFTIFLAYLNPLGKQQAVVSKSELQEREKRRKGESVVVELREYLQHSASSGKHFKQRGMVLPFQPLSMAFSNINYYVDVPLELKQQGILEERLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGNIYISGYPKSQDSFARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDFETQKAFVEEVMELVELTPLKGALVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPKSSELINYFEAVDGVPKIRSGYNPATWMLEVTSSTEENRLGVDFAEIYRRSSLYQYNKELVESLSRPSNNSKELHFPTKYCRSYFDQFLTCLWKQNLSYWRNPHYTAVRFFYTVIISLMLGTICWRFAVQPVVSVERFVSYRERAAGMYSALPFAFAQVIIEFPYVFAQAMIYSTIFYSMASFVWSVDRFIWYLFFMYVTMLYFTFYGMMTTAVTPNHNVAAIIAAPFYMLWNLFSGFMIPHKRIPVWWRWYYWANPVAWSLYGLLTSQYGGDEKPVKLSNGNSMAISQVLRVVFGYRHDFLCVAAIMVAGFCVFFAIIFAFAIKSFNFQRR 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271908g00008 728 Gene3D - 171 401 IPR027417 -
Stsc271908g00008 728 FunFam ABC transporter G family member 34 171 403 - -
Stsc271908g00008 728 Pfam ABC transporter 186 337 IPR003439 GO:0005524
Stsc271908g00008 728 CDD ABCG_PDR_domain2 154 392 IPR034003 -
Stsc271908g00008 728 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 1 522 - -
Stsc271908g00008 728 Pfam Plant PDR ABC transporter associated 43 108 IPR013581 -
Stsc271908g00008 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 393 IPR027417 -
Stsc271908g00008 728 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 157 410 IPR003439 GO:0005524
Stsc271908g00008 728 Pfam ABC-2 type transporter 524 665 IPR013525 GO:0016020|GO:0140359
Stsc271908g00008 728 Pfam ABC-2 type transporter 1 38 IPR013525 GO:0016020|GO:0140359
Stsc271908g00008 728 SMART AAA_5 194 386 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271908g00008 Stsc-Chr271908 62454 66165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271908g00008 182 369 Calmodulin-binding Proteins AT2G36910 25.000 3.74e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271908g00008 K08711 - gmx:100785375 1337.4