Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271908g00007 ATGCATGCATCTGCCAGGGCATTCCAGGCCGAAGGAAATGTGTCGACGGATCCTGTCGCAATAGATGCGCCTAGTGGTTTTCTCTTTGAGTGGTGGTCTGTTTTCTGGGACATATATATTGCAAGGACTGATCATAAACACTCAGAAGCAGCAGCAAATTATACCAAGACCCAACAAAGTAAGGCTCGAGAAATTCAAAAGCAACAAGAGCAAGAGCTTCAGAGTCCAAATCAGAGACAACAAATGCAAATGCAGCTCTATATGCAGAGATATGCTCAGCAACAGGAACAGGAGCAGCAGCTACAGGAGCAGCGGCAGCAGCAGCTTAGGGCTCAGCTTGTTAGTGGCAGCATTACCCGTCCTATTAACAATGATCTTTCAATGAGGCAGAAACGCGCAACGTCTACTGCTATGGCTTCAAGAATGTATGAGAACAGGTTGAAGTTACCACTCCAGAGAGATGATTTAGATGATGTTTCCATCAAGCAAAAGGGAAGTGGTAATGTTGGTCAGCTTCTGGAACCAAATCATGCCTCATTGTTGAAAGCAGTAGCAGCAACAACTGGTGGCCAAGCTACAGGTCAAACATCTCTCATTGCACCTAACATTTTACAAGGCAATCTTCAAGTTCAAAATCAGAACCAGCAACTTCCAGGATCTCTAGACATGAAAAGCGATATGAATCCAATGGTTAGGCCTCAAGCTGTTATACCAGATGGATCCTTTGTTGGTGTACATGGTACTGGTTCAAATCAAGGCTGTAACAATTTGACTCTGAAAGGATGGCCTCTAGCAGGACTGGATCAGCTTCGCTCAGAACTTTTTCAGCAGTCTCCACACACTCTCAATTTTTCCCTGCAGCAGCAACTTATACTTCAGGCACAACATGCACATGCTCTAGGTTCTCCCTCCCCCCCTGATTTTGAGAACAGAAGACTCAGAGTACTTCTTAATAATCCAACTATGGGTCTTGTGAAAGATGGACGATCAAATTCAGCATGCGACTCAATTCCTAACGTGGTTCCTGCACAAGTTTGTTCTCCTATGTTGACTCATCCGGACACAGATATGTTCCTTAAGCAACAAATGCAAAACAGCAATCAGCAGCTTCAACATCTGCAGCATCCTCCTTCAAACCAGCAGTCTCAGAATCTCCAGCGGCAAGGAAAAATTGGTTCCGGGAGCAATACACAAGATGGGTGCATGTCCACTAGTTTACAAGGAAATGATCAGGTGTCCAAAACTCAAATTGGGCGAAAGCGAAAGCAAGCATCATCTTCAGGTCCTGCCAATAGTTCTGGAACGGCAACCACCACAGGACCGTCTACCAGTTCACCTTCAACGCCATCTACACAAACGCTGGGAGATGTGCCTGCTCTGCAGCAGAATGGTCCTTCTTCTAAGTCATTGCTTATGTATGGTTCTGATGGTTTGGGATCACTTACTTCGGCACAAAATCAACTGGCTGATATGGACTGCCTTATTGGTGATGGAACTTTCAGTGACAATGTTGAATCGCTCTTTTCTGGTGATGATGCAGACCCTAGAGATAAAATTGGCAAAGAATTCTCATTCAAGGAGACCAAACGTGTTATCGCAAGCACACATAAAGTTGAGTGTTGCCACTTCTCATCAGATGGGAAACTGTTTGCTACTGGTGGCCATGATAAAAAGGTATCTTTGTGGTGCACAGATTCGTTTAACCTGAAGTCTACACTAGAAGAGCATACTCAGTGGATAACTGATGTTCGATTTAGTTCAAAGACATCGCGCCTCGCTACATCCTCAGCGGACAAAACTGTTAGGGTCTGGGATACTGAAAATCTCGGTTATAGTCTTCGAACATTCACAGGACATGGTTCAACTGTGATGTCACTAGACTTTCACCCGAGTAAAGACGACCTTATTTTCTCTTGTGACAATAATGAGATAAGATACTGGAGTATTAAAAACAATAGTTGCGCTGGGGTTTTCAAGGGTGGTGCAACTCAGATGAGATTTCAACCTCGTTTGGGTAGGCTTCTTGCAGCTGCGGTAGATAATGTCATATCCATTATTGATGTAGAGACCCTTGGATGCACACTTAAATTACAGGGCCATAGTAACTTTGTCCGTTCCGTGTGCTGGAATAATTCTGGAAAATATCTGGCATCTCTTAGTGATGATCTGGTTAGGGTGTGGACAGTTGTATCTAATAGCAAAGGGGAATGCATTCATGAACTGAATGCCTCTGTGAACAAATTCAACACCTGTGCCTTCCACCCCTTCTATCCTTTTCTCATCATTGGCTGCAATGAAGCAATTGAGCTGTGGGACTTTGGTCAGAACAAGACATTGACACTGGCTGCTCATGAAAAGCTTGTATCATCCCTGGCAGTATCAAATGCTAATGGTTTGGTTGCATCAACTAGTCATGACAAGCATTTCAAGATCTGGAACTGA 2442 0.441 MHASARAFQAEGNVSTDPVAIDAPSGFLFEWWSVFWDIYIARTDHKHSEAAANYTKTQQSKAREIQKQQEQELQSPNQRQQMQMQLYMQRYAQQQEQEQQLQEQRQQQLRAQLVSGSITRPINNDLSMRQKRATSTAMASRMYENRLKLPLQRDDLDDVSIKQKGSGNVGQLLEPNHASLLKAVAATTGGQATGQTSLIAPNILQGNLQVQNQNQQLPGSLDMKSDMNPMVRPQAVIPDGSFVGVHGTGSNQGCNNLTLKGWPLAGLDQLRSELFQQSPHTLNFSLQQQLILQAQHAHALGSPSPPDFENRRLRVLLNNPTMGLVKDGRSNSACDSIPNVVPAQVCSPMLTHPDTDMFLKQQMQNSNQQLQHLQHPPSNQQSQNLQRQGKIGSGSNTQDGCMSTSLQGNDQVSKTQIGRKRKQASSSGPANSSGTATTTGPSTSSPSTPSTQTLGDVPALQQNGPSSKSLLMYGSDGLGSLTSAQNQLADMDCLIGDGTFSDNVESLFSGDDADPRDKIGKEFSFKETKRVIASTHKVECCHFSSDGKLFATGGHDKKVSLWCTDSFNLKSTLEEHTQWITDVRFSSKTSRLATSSADKTVRVWDTENLGYSLRTFTGHGSTVMSLDFHPSKDDLIFSCDNNEIRYWSIKNNSCAGVFKGGATQMRFQPRLGRLLAAAVDNVISIIDVETLGCTLKLQGHSNFVRSVCWNNSGKYLASLSDDLVRVWTVVSNSKGECIHELNASVNKFNTCAFHPFYPFLIIGCNEAIELWDFGQNKTLTLAAHEKLVSSLAVSNANGLVASTSHDKHFKIWN 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271908g00007 813 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 781 813 - -
Stsc271908g00007 813 ProSiteProfiles Trp-Asp (WD) repeats profile. 531 562 IPR001680 GO:0005515
Stsc271908g00007 813 Gene3D - 659 813 IPR015943 GO:0005515
Stsc271908g00007 813 ProSiteProfiles Trp-Asp (WD) repeats profile. 697 729 IPR001680 GO:0005515
Stsc271908g00007 813 SUPERFAMILY WD40 repeat-like 536 813 IPR036322 GO:0005515
Stsc271908g00007 813 Gene3D - 517 658 IPR015943 GO:0005515
Stsc271908g00007 813 MobiDBLite consensus disorder prediction 366 470 - -
Stsc271908g00007 813 Coils Coil 77 112 - -
Stsc271908g00007 813 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 813 - -
Stsc271908g00007 813 MobiDBLite consensus disorder prediction 54 80 - -
Stsc271908g00007 813 SMART WD40_4 566 605 IPR001680 GO:0005515
Stsc271908g00007 813 SMART WD40_4 774 813 IPR001680 GO:0005515
Stsc271908g00007 813 SMART WD40_4 524 563 IPR001680 GO:0005515
Stsc271908g00007 813 SMART WD40_4 690 728 IPR001680 GO:0005515
Stsc271908g00007 813 SMART WD40_4 734 772 IPR001680 GO:0005515
Stsc271908g00007 813 SMART WD40_4 609 648 IPR001680 GO:0005515
Stsc271908g00007 813 SMART WD40_4 651 687 IPR001680 GO:0005515
Stsc271908g00007 813 ProSiteProfiles Trp-Asp (WD) repeats profile. 781 813 IPR001680 GO:0005515
Stsc271908g00007 813 CDD WD40 535 813 - -
Stsc271908g00007 813 ProSiteProfiles Trp-Asp (WD) repeats profile. 573 608 IPR001680 GO:0005515
Stsc271908g00007 813 ProSitePatterns Trp-Asp (WD) repeats signature. 592 606 IPR019775 -
Stsc271908g00007 813 Pfam WD domain, G-beta repeat 569 605 IPR001680 GO:0005515
Stsc271908g00007 813 Pfam WD domain, G-beta repeat 535 562 IPR001680 GO:0005515
Stsc271908g00007 813 Pfam WD domain, G-beta repeat 777 813 IPR001680 GO:0005515
Stsc271908g00007 813 Pfam WD domain, G-beta repeat 612 648 IPR001680 GO:0005515
Stsc271908g00007 813 Pfam WD domain, G-beta repeat 693 727 IPR001680 GO:0005515
Stsc271908g00007 813 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 573 608 - -
Stsc271908g00007 813 ProSiteProfiles Trp-Asp (WD) repeats profile. 616 657 IPR001680 GO:0005515
Stsc271908g00007 813 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 616 651 - -
Stsc271908g00007 813 MobiDBLite consensus disorder prediction 366 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271908g00007 Stsc-Chr271908 55319 60931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271908g00007 610 813 Miscellaneous Gene Families AT5G08390 25.592 9.84e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Stsc271908g00007 WD40 0.0075 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271908g00007 - - aip:107624271 1139.79