Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271908g00005 ATGGCGCTGATCTCTCACAGCGTGACTATTCTCTTTTTCCTCCTCGTCATGGCGAGTTACCGAGTGGACTCGGAGCCAACTCAGGACAAAGAAGCCCTCCTTGCTTTCATCTCGAAAACAAAACACCAGAGTCGAATCCAATGGAACGCCAACGACTCCGCCTGCAACTGGGTCGGAGTTCAATGCGACTCCTCCAACTCTTACGTCTACTCTCTCCGCCTCCCGGCCGTTGGACTAGTGGGACCCATCCCTCCCGACACCATAGGCCGCCTCACCAACCTCCGTGTCCTCAGCCTCCGCTCCAACGGCCTCACCGGCCAGATCCCCTCTGATTTCTCCAACCTCAGCTTCCTCCGCGGCCTCTACCTCCAGAAGAATGAGTTCTCCGGCGACTTCCCTTCCTCCGCAACTCGCCTAACTCGCTTGACTCGTTTGGATCTCTCCTCTAACAACTTCACAGGCTCCATTCCTTTCTCCGTCAACAACCTCACTCACCTCACCGGTCTCTTTCTCCAGAACAACAGCTTCTCCGGCACACTTCCCAGCATAACTGCCAAATTGAACGACTTCAACGTCTCCAACAACAATCTCAACGGCTCCATCCCCAAAACACTCACAAAATTTCCCAAATCATCTTTCGCCGGAAACATAGATCTCTGCGGCGGACCTCTGCCGCCCTGCAGCCCGTTCTTCCCGGCGCCTGCGCCGTCGCCGGGAGAAGCTCCACCTGGAAAGCCTCTTCACAAGAAGTCAAACAAACTATCCACCGGCGCCATTGTTGGAATTGTCGTCGGCTCCGTCCTCGGCTTGCTGCTTCTGCTTCTGCTACTCTTCCTCTGTCTCAGAAAGAGGCAGCGGCGGCAACCTGCCAAACCTCCGAAACCGGTGGTTCCTGTTGCCGCACGTGGCGTACCGGCGGAGGCGGGAACTTCGTCGTCGAAGGAGGACATAACGGGAGGGTCAGCGGAAGCAGAGAGGAACAAATTGGTGTTCTTCGAGGGAGGAGTGTACAGCTTTGACTTGGAGGATCTGCTTCGTGCGTCGGCGGAGGTTCTTGGAAAAGGTAGCGTAGGTACGTCGTACAAGGCGGTGCTGGAGGAAGGGACGACGGTGGTAGTGAAGAGGCTGAAGGACGTAGTTGTTAGTAAGAAAGAGTTCGAGATGCAAATGGAGGTTCTTGGGAAGATCAAACACGATAATGTGGTTCCTCTCCGAGCTTTCTATTACTCCAAAGATGAGAAGTTGCTCGTTTACGATTACATCCCCGCCGGCAGCCTCTCTGCTGTTCTCCACGGGAGCAGAGTGTCTGGGAGAACACCGTTAGACTGGGACAACAGAATGAAGATTGCACTAGGAGCAGCAAGAGGCCTAGCATGCCTCCACGTGTCAGGCAAAGTGGTCCACGGCAACATCAAATCCTCCAACATCCTCCTACGCGGTCCGGACCACGAAGCCGCCGTTTCCGACTTCGGCCTCAACCCATTGTTTGGAAACGGTGGCCCCTCCAACCGCATCGCGGGCTACCGGGCGCCGGAGGTGGTAGAAACCCGAAAGGCGACATTCAAGTCTGATGTGTACAGCTTTGGAGTGTTGCTGTTGGAGCTACTAACAGGGAAAGCACCAAACCAAGCGTCGCTTGGGGAAGAAGGCATCGATCTGCCACGGTGGCTGTTGCAAATTGCAATGGCTTGTGTGTCAGTTGTGCCGGACCAAAGGCCCAACATGCAAGACGTGGTTCGCATGATTGAGGAGATGAACCGCGGGGAGACCGATGAGGGTTTGAGACAGTCGTCAGATGACCCTTCTAAAGGATCCGAGGGTCATACTCCACCCCAGGAGAGTAGAACCCCACCCAGATCGGTCACACCGTAA 1872 0.5534 MALISHSVTILFFLLVMASYRVDSEPTQDKEALLAFISKTKHQSRIQWNANDSACNWVGVQCDSSNSYVYSLRLPAVGLVGPIPPDTIGRLTNLRVLSLRSNGLTGQIPSDFSNLSFLRGLYLQKNEFSGDFPSSATRLTRLTRLDLSSNNFTGSIPFSVNNLTHLTGLFLQNNSFSGTLPSITAKLNDFNVSNNNLNGSIPKTLTKFPKSSFAGNIDLCGGPLPPCSPFFPAPAPSPGEAPPGKPLHKKSNKLSTGAIVGIVVGSVLGLLLLLLLLFLCLRKRQRRQPAKPPKPVVPVAARGVPAEAGTSSSKEDITGGSAEAERNKLVFFEGGVYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVSKKEFEMQMEVLGKIKHDNVVPLRAFYYSKDEKLLVYDYIPAGSLSAVLHGSRVSGRTPLDWDNRMKIALGAARGLACLHVSGKVVHGNIKSSNILLRGPDHEAAVSDFGLNPLFGNGGPSNRIAGYRAPEVVETRKATFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWLLQIAMACVSVVPDQRPNMQDVVRMIEEMNRGETDEGLRQSSDDPSKGSEGHTPPQESRTPPRSVTP 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271908g00005 623 Gene3D Phosphorylase Kinase; domain 1 313 420 - -
Stsc271908g00005 623 MobiDBLite consensus disorder prediction 585 602 - -
Stsc271908g00005 623 MobiDBLite consensus disorder prediction 585 623 - -
Stsc271908g00005 623 Gene3D Ribonuclease Inhibitor 186 228 IPR032675 -
Stsc271908g00005 623 SUPERFAMILY L domain-like 48 208 - -
Stsc271908g00005 623 FunFam Probable inactive receptor kinase RLK902 26 184 - -
Stsc271908g00005 623 MobiDBLite consensus disorder prediction 603 623 - -
Stsc271908g00005 623 SUPERFAMILY Protein kinase-like (PK-like) 350 583 IPR011009 -
Stsc271908g00005 623 Pfam Protein kinase domain 349 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271908g00005 623 PANTHER OS05G0588300 PROTEIN 9 598 - -
Stsc271908g00005 623 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
Stsc271908g00005 623 ProSiteProfiles Protein kinase domain profile. 346 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271908g00005 623 FunFam pollen receptor-like kinase 1 315 420 - -
Stsc271908g00005 623 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Stsc271908g00005 623 Gene3D Transferase(Phosphotransferase) domain 1 422 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271908g00005 Stsc-Chr271908 38269 42049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271908g00005 8 603 Receptor kinase-like Gene Family AT5G58300 50.000 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc271908g00005 Pkinase 7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271908g00005 - - gmx:100806857 889.026