Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271908g00003 ATGGCATCACCATCGGAACTAAGCCTTGATTGCAAGCCACACAGCTACTCCATGCTTCTCAAATCCTTTGGAGGAGATCACAATAGTAATAGTAATGGTGGTAATGATCAGCAGCAGAATAATCAGAGCTACAAGATTGAGGAGTTCCTGTCCCGCCTTGAAGAAGAACGGCTCAAGATCGATGCCTTCAAGCGTGAGCTTCCTCTCTGCATGCACCTACTCACCAACGCTATGGAGGCGTCAAGGCAGCAACTGCAGGCGTTCAGAGCAAACAACAACCAAGGAACAAGGCCAGTGCTGGAAGAATTCATTCCCATAAAGCATTCAACTACTACTACTACTACTACCAACTCTGAAATCTCATCGGAGAAGGGGGCGTGTTCCATGAACATGATGAGTGATAACAAGGCCAATTGGATGACATCTGCTCAACTATGGAGCCAACCAATCCAAGATCAAGGAACAACAACAACAACTGCCACTCCTCCTCCTCCTTCAAAAGATGGTGATAATAATAATGGATTCATGAGTAGTATAAGCATGAGCCCCAAGCTAACCCTGGAGAACAAGCAGAGGAACAGTGCAGGAGCAGGAGGAGGAGCGTTCCTTCCCTTCTCCAAGGAAAGGAGGAATAATAACAAGTCTGGTTGTGCATTGGGAGGTGAGCTTGCACTTATTGCTTCACCTGAGAAAGAAATTCTCATCATGGATGATAATAATAATAATAATAATAAGAGAGACCACTCATCCAATAATGATCAGGCTAAAGGAACTGCCACTACTGCTACTCCACCAGCTCCATCTACAACCACCACTACCACCACCACCAGTCAAACTCATAGGAAAGCAAGAAGGTGCTGGTCACCTGACTTGCACCGTAGATTTGTTAATGCTCTTCAAATGCTCGGCGGATCTCAAGTGGCCACACCAAAACAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAGGTAAAAAGCCATCTCCAGAAATATAGGCTCCACACCAGAAGACCAAGCCCAACCCCACAACCAGGTGCACCAGCACCGCAGCTTGTCGTCCTAGGTGGAATCTGGGTCCCACCTGAGTACGCCACCGCTGCCGGAGCCCCTGCCGCCATCTACGGTGCTCACCATCCCGGCTCCCACGCCCCGCCGCCGCACTACTGCGCAGCCACACCAATGCCTCAGGAGTTCTACACGGCAGCTCCACCTCAGCCGCTGCTTCCGCCTCCGCCTCCTCCGCACCAGCTGCACATGTACAAGGCGGCGGGGCAGAGTAGGTCCCCGGAGTCGGAGGTAGGAGGAGGCGGTGAGCGGTCGGAGAGCATAGAGGATGGGAAGTCGGAGAGTAGTAGCTGGAAGGGTGAGAGTGAAGGAGAGAGGAAAGAGAGCAATTGCAGTGAAATCACTCTCAAATTCTAA 1431 0.5045 MASPSELSLDCKPHSYSMLLKSFGGDHNSNSNGGNDQQQNNQSYKIEEFLSRLEEERLKIDAFKRELPLCMHLLTNAMEASRQQLQAFRANNNQGTRPVLEEFIPIKHSTTTTTTTNSEISSEKGACSMNMMSDNKANWMTSAQLWSQPIQDQGTTTTTATPPPPSKDGDNNNGFMSSISMSPKLTLENKQRNSAGAGGGAFLPFSKERRNNNKSGCALGGELALIASPEKEILIMDDNNNNNNKRDHSSNNDQAKGTATTATPPAPSTTTTTTTTSQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPTPQPGAPAPQLVVLGGIWVPPEYATAAGAPAAIYGAHHPGSHAPPPHYCAATPMPQEFYTAAPPQPLLPPPPPPHQLHMYKAAGQSRSPESEVGGGGERSESIEDGKSESSSWKGESEGERKESNCSEITLKF 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271908g00003 476 Pfam Myb-like DNA-binding domain 284 335 IPR001005 -
Stsc271908g00003 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 279 339 IPR017930 -
Stsc271908g00003 476 MobiDBLite consensus disorder prediction 403 476 - -
Stsc271908g00003 476 MobiDBLite consensus disorder prediction 440 476 - -
Stsc271908g00003 476 MobiDBLite consensus disorder prediction 253 282 - -
Stsc271908g00003 476 MobiDBLite consensus disorder prediction 151 179 - -
Stsc271908g00003 476 FunFam Myb family transcription factor 281 339 - -
Stsc271908g00003 476 NCBIfam myb-like DNA-binding domain, SHAQKYF class 282 337 IPR006447 GO:0003677
Stsc271908g00003 476 MobiDBLite consensus disorder prediction 237 286 - -
Stsc271908g00003 476 Gene3D - 281 339 - -
Stsc271908g00003 476 SUPERFAMILY Homeodomain-like 279 340 IPR009057 -
Stsc271908g00003 476 MobiDBLite consensus disorder prediction 403 420 - -
Stsc271908g00003 476 Coils Coil 46 66 - -
Stsc271908g00003 476 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 35 457 IPR044787 GO:0003700|GO:0006355
Stsc271908g00003 476 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271908g00003 Stsc-Chr271908 4343 6580 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271908g00003 1 403 G2-like Transcription Factor Family AT2G03500 51.074 6.74e-118 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc271908g00003 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271908g00003 - - gmx:100807925 468.003