Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271907g00020 ATGAATGCTCTTAGAGACCCCGAAGTAAGCATGGTTGGAGTCTATGGACTTGGAGGTGTCGATAAGACCACTCTCGTCGAACAAGTTGCTCAAATAGCTAAGAAAGAAAAGACGTTTGATACAGTGGTTATGGCCACCATATCCAAAACACCAGACATCAAAACAATTCAAGAGGAGATTGCTGATAAGTTAGGTCTTCATCATTTTGAAGAGGTAACTGTTGCTGGTAGAGCACCTCGCTTATGCCAGAGAATCAAAATGGAGAAAACTATCCTTCTCGTATTGGATGATATTTGGGAAGCCCTTGACTTGAAAAAAGTAGGGATTCCCTCTGAAGGTGAACATAGTGGCTGCAAAATATTGATGACTTCTAGAAATTTAGATCTGCTACGTTCGATGCGCGTTACAAAGCATTTTTGGCTAAAAGTTTTGAATGATGAAGAATCATTGAGCTTGTTCAAGTCTATGGCAGGTAATTTAGACAAAGAACCCGACAAGCATCAAATTGCACTCCAATTGGCGAAAAAGTGTGCAGGATTGCCTATTCTCATAGTTACCACGGCGCGATCATTGATAGATCAAGACATCCATGCGTGGAAAGATGCTTTGAGCCAATTAGTAAAGATAGACAATGAGGCATTTGAAGAGATAACTTACTCAGCTTTGGAGTTAAGTTACAAAAGGCTGAAAGGCAATGAAATAAAAGCTTTTTTCTTGCTCTGTGCAACTATTGGTAAAAATCCTTCTGTTAATGACCTATTCAAATATGGAATGGGTCTAGGAATATTCAACAGCACAAATACAATGGAAGGTGCCAGAAACAGACTTCACAACATGATAAGTGCATTGAAGGCATCTTGTTTGTTGGAAGATGACACAAGCACAACAAGGGTCAAAATGCATGATGTTGTTCGAGAAGTAGCTATCTCCATAGCTTATAGGGATTATCACATACTAGTTATAGACAGAGATGATGCAAAGGAATTTCCACCAACAGATATTCTTAGCAAGTGCTCCCAGATCATTATGTGCCACTGTCATATCCCGCCAGCTTCCTGA 1059 0.3985 MNALRDPEVSMVGVYGLGGVDKTTLVEQVAQIAKKEKTFDTVVMATISKTPDIKTIQEEIADKLGLHHFEEVTVAGRAPRLCQRIKMEKTILLVLDDIWEALDLKKVGIPSEGEHSGCKILMTSRNLDLLRSMRVTKHFWLKVLNDEESLSLFKSMAGNLDKEPDKHQIALQLAKKCAGLPILIVTTARSLIDQDIHAWKDALSQLVKIDNEAFEEITYSALELSYKRLKGNEIKAFFLLCATIGKNPSVNDLFKYGMGLGIFNSTNTMEGARNRLHNMISALKASCLLEDDTSTTRVKMHDVVREVAISIAYRDYHILVIDRDDAKEFPPTDILSKCSQIIMCHCHIPPAS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271907g00020 352 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1 336 - -
Stsc271907g00020 352 Gene3D - 143 230 IPR042197 -
Stsc271907g00020 352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 241 IPR027417 -
Stsc271907g00020 352 Gene3D - 1 139 IPR027417 -
Stsc271907g00020 352 Pfam NB-ARC domain 6 226 IPR002182 GO:0043531
Stsc271907g00020 352 PRINTS Disease resistance protein signature 85 99 - -
Stsc271907g00020 352 PRINTS Disease resistance protein signature 11 26 - -
Stsc271907g00020 352 PRINTS Disease resistance protein signature 177 191 - -
Stsc271907g00020 352 FunFam Probable disease resistance protein At1g61300 1 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271907g00020 Stsc-Chr271907 120493 122226 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271907g00020 8 315 WRKY Transcription Factor Family AT5G45050 25.868 1.37e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271907g00020 - - adu:107474809 551.206