Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271907g00012 ATGGCAGCAAAACCTGATTTTTCATCTAAACACATCATCATACCATCTTCTCCAACTCCTAATCATCTTAGAGAGTTCAAAATCTCCCTCCTTGATCAACTGGCTCCTCCACTTTACATTCCCATTGTTCTCTTTTACTCTGCCTATGATTTCAACCCTTCAGATCTTGATTTCAAAACAATTTCTGAGAAGCTGAAATCTTCTCTGTCAAAAGTCCTTTCCATATATCACCCCTTCTGTGGAAGAGTGAAAGACAACTCCACCGTTGAGTGCGACGATTCCGGCATTCTTTTCATCGAGTCTAAAGTCACCACTGATCTTAGCCACATACTTAACAATCCACAAGTTCATGAAATAACTCAACTCTTGCCATTTGATCCCTACAATCCTCAACTTGCTGACCAAGAAAACAAGGAGCTTCGAGCAACAAATATGGCTGTTCAGCTGAATGAATTCACCTGTGGAGGAATAGCAATTGCTGCTTGCTTCTCACACAAGATTGCCGATGGCGCGACCACGGCCACATTCCTCAAATCTTGGGCTGAAATTGCAAGTGGTAGAGGGAACATAGCAGCATCATCGTCTGAAATCGATGCAGCCATGGTATTCCCACCGAAGGACATAAAATTGGACATAACTCGCGGCATGGTTGGACTTGGAAAGACAGAGATTGTGACTAAGAGGTTCATTTTCGACAAGGCGAATTTGTCCAAACTAAAGGACCAGTTTGGGAGCTTCAATCCAACTCGTGTTGAAGCCGTAACAGCACTCATATGGAAATCAGCACTAGAAGCAAAGAGAGTGAATTCTAGTAGCGGGCTTCATTCGGCGAGTATGATGTCCCACGCGGTCAACATTCGCGACCGGATGAACCCACCATTGTCTAAGAACATGTTAGGAAATTTTTGGCAACAAAGTATTTCTCCAATTATGGAGTTTAATGGAGAGGTGAGGCTGCTTGATTTGGCTAACATGGTAAGAGAAACAATAAGAAAAGTTGATGCTGATTTTATATGTAAGCTTCAAGGTGATGGGTTTGTTAAGATTATTGAGTCCTTAATGGAAGCAAAAAGGATGGTGGCACAAAAGGGTATTCCTGGTTATGGCTTTAGTAGTTGGGTAAGATTTGGTTTCTATGAAGCTGATTTTGGATGGGGAATGCCAAGTTGGGTTTGCACCATTGGTGTTCCCATAGAAAATGTTATCATCTTGATGGCTACAAGAGATGGGGATGGAATAGAGGCATGGGTGACCTTGAACAAATTAGATATGGTCGAATTTGAATGTAATCCAGAACTTCTTAAATTTACTTTAAAGTGA 1320 0.4174 MAAKPDFSSKHIIIPSSPTPNHLREFKISLLDQLAPPLYIPIVLFYSAYDFNPSDLDFKTISEKLKSSLSKVLSIYHPFCGRVKDNSTVECDDSGILFIESKVTTDLSHILNNPQVHEITQLLPFDPYNPQLADQENKELRATNMAVQLNEFTCGGIAIAACFSHKIADGATTATFLKSWAEIASGRGNIAASSSEIDAAMVFPPKDIKLDITRGMVGLGKTEIVTKRFIFDKANLSKLKDQFGSFNPTRVEAVTALIWKSALEAKRVNSSSGLHSASMMSHAVNIRDRMNPPLSKNMLGNFWQQSISPIMEFNGEVRLLDLANMVRETIRKVDADFICKLQGDGFVKIIESLMEAKRMVAQKGIPGYGFSSWVRFGFYEADFGWGMPSWVCTIGVPIENVIILMATRDGDGIEAWVTLNKLDMVEFECNPELLKFTLK 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271907g00012 439 PANTHER F21J9.9 9 436 - -
Stsc271907g00012 439 Pfam Transferase family 7 433 - -
Stsc271907g00012 439 Gene3D - 222 434 IPR023213 -
Stsc271907g00012 439 Gene3D - 6 211 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271907g00012 Stsc-Chr271907 74696 76015 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271907g00012 12 428 Monolignol Biosynthesis Gene Families AT5G48930 21.315 5.95e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271907g00012 - K13065 gmx:100792323 492.656