LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc271906g00022	ATGGCCCACCGAGAGAACCCCACGCGCCCACAGCGCGAGGCCAAAAAGAGGGCCGCAGCTGCACTCTCCGAGCTTCAATCCGGCGCGTCCAAGAAGAAGCGCGTCGTATTGGCCGAACTCACCAACGTCAACAACTCCAGCGTTGCACCACCACAACCTGCTAAAGAGGTTCCCGGTGACCTCCGCTTTAATCACAACGACGAGAAAACAAAAACCACCACCACCACCACCAGGGGCAAGAAGAGAAATGTCGGAAAAAAACAGAAACCGGCGGCGGCGACTCCACCGGAAATCGTTGACGCTACAAAGAAGTCCGAAGTTACCGTTGATCCGCAGTTATGTGCTCCTTATGCTTCTGATATCTACGATTATCTTCGTAAAATGGAGGTGGATCCAAGTAAGAGGCCATTACCAGATTATGTGCAGAAAGTGCAGAGGCATGTGAATGCAAACATGAGGGGTGTTCTTGTGGATTGGTTAGTAGAGGTTGCCGAGGAATACAAGCTTGTTTCCGACACCCTTTACTTCTCAGTTTCATATATCGACAGATACTTGTCTTTGACTTCCTTGACAAGTCAAAAGCTGCAGCTGCTTGGTGTTTCTGCAATGCTCATTGCATCAAAATATGAGGAGATAAAGCCACCTGAAGTGGAAGAATTTTGTTACATTACAGACAACACATACACCAAGGATCAGGTTGTGGAGATGGAAGCTGATATATTGAAGTCTTTGAAGTTTGAATTGGGTGGTCCAACAGTAAAGACCTTTCTAAGATTCTCCAAAGTTGCTCAAGAAAGTAAAGATACTTCAGACTTGCAATTTGAGTTTCTCACTTGCTACCTCGCTGAGCTCAGTTTGTTGGATTATAATTGTGTAAAATTTTTGCCTTCTTTGGTGGCGGCATCTGTTGTATTTCTAGCAAGATTTATGCTAAGCCCAAAGACACATCCTTGGAATGCAGCACTTCATCAACTCACCAGATATAAACCTGCCGAATTGAGGGAATGTGCTCAAAATATACATGATTTGTACCTCAGTAGGAGAGGTGGCTCTTTGCAAGCTGTGAGAGAGAAATACAAACAACATAAGTTCAAATGCGTGGCCACAACTCCGTCACCTCCCGAGATACCCCTTTCCTATTTTGAATTTAGAGGGGAATATCCATAG	1167	0.4542	MAHRENPTRPQREAKKRAAAALSELQSGASKKKRVVLAELTNVNNSSVAPPQPAKEVPGDLRFNHNDEKTKTTTTTTRGKKRNVGKKQKPAAATPPEIVDATKKSEVTVDPQLCAPYASDIYDYLRKMEVDPSKRPLPDYVQKVQRHVNANMRGVLVDWLVEVAEEYKLVSDTLYFSVSYIDRYLSLTSLTSQKLQLLGVSAMLIASKYEEIKPPEVEEFCYITDNTYTKDQVVEMEADILKSLKFELGGPTVKTFLRFSKVAQESKDTSDLQFEFLTCYLAELSLLDYNCVKFLPSLVAASVVFLARFMLSPKTHPWNAALHQLTRYKPAELRECAQNIHDLYLSRRGGSLQAVREKYKQHKFKCVATTPSPPEIPLSYFEFRGEYP	388

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc271906g00022	388	FunFam	Mitotic cyclin 6	136	236	-	-
	Stsc271906g00022	388	Gene3D	-	136	249	-	-
	Stsc271906g00022	388	FunFam	Cyclin A1	238	369	-	-
	Stsc271906g00022	388	PIRSF	Cyclin_A_B_D_E	2	379	IPR046965	GO:0016538\|GO:0044772
	Stsc271906g00022	388	Gene3D	-	120	369	-	-
	Stsc271906g00022	388	MobiDBLite	consensus disorder prediction	1	96	-	-
	Stsc271906g00022	388	CDD	CYCLIN_AtCycA-like_rpt2	251	364	-	-
	Stsc271906g00022	388	MobiDBLite	consensus disorder prediction	60	75	-	-
	Stsc271906g00022	388	SMART	cyclin_7	158	242	IPR013763	-
	Stsc271906g00022	388	SMART	cyclin_7	254	342	IPR013763	-
	Stsc271906g00022	388	MobiDBLite	consensus disorder prediction	1	19	-	-
	Stsc271906g00022	388	Pfam	Cyclin, N-terminal domain	120	248	IPR006671	-
	Stsc271906g00022	388	SUPERFAMILY	Cyclin-like	110	248	IPR036915	-
	Stsc271906g00022	388	ProSitePatterns	Cyclins signature.	153	184	IPR006671	-
	Stsc271906g00022	388	SMART	Cyclin_C_2	251	373	IPR004367	-
	Stsc271906g00022	388	SUPERFAMILY	Cyclin-like	251	375	IPR036915	-
	Stsc271906g00022	388	PANTHER	CYCLINS	76	367	IPR039361	-
	Stsc271906g00022	388	Pfam	Cyclin, C-terminal domain	251	372	IPR004367	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc271906g00022	Stsc-Chr271906	166882	169816	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc271906g00022	1	382	Core Cell Cycle Gene Families	AT1G47230	56.771	5.43e-150	427

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc271906g00022	K06627		-	gmx:100801988	528.48