Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271905g00036 ATGGGAGCTCGTTGCTCTAAATTATCTCTCTGTTGGTGGCCTTCACATATCAAATCAAACCTTCATGACTTATCTGATAATGATGATGGGGGCAAGAATGAGAAGGATCAATGGGTTGGATTCAATGAGTACACGTGGGATCAGCTTAAGGTTGCAACTTCAGGTTTCTCACCAGAGAACATTGTCTCAGAACATGGTGAGAAGGCTCCCAATGTTGTTTACAAGGGAAGGCTTGAAGATGATAGGTTGGTTGCTGTCAAGCGCTTCAACAAATCAGCTTGGCCTGATTCAAGACAGTTTCTAGAGGAGGCAAGAGCAGTGGGGCAGTTAAGGAATGAAAGGTTAGCTAACTTGGTTGGATGCTGCTGTGAAGGAGAAGAGAGGTTGCTTGTTGCAGAGTTCATGCCACATGAAACACTCTCCAAACATCTCTTCCACTGGGAGACTCAGCCCATGAAATGGGCAATGAGGCTGAGGGTGGCATTGTATTTGGCACAAGCGTTGGATTACTGCAGCAGTAGGGGAAGAGCCTTGTATCACGATCTTAATGCTTATAGAATCTTGTTTGATGAGGATGCCAACCCCAGACTCTCTTGTTTCGGACTCATGAAAAACAGTAGAGACGGTCGAAGCTATAGCACAAATTTAGCCTTCACTCCTCCAGAGTATTTGAGGACTGGAAGAATCACCCCTGAAAGTGTAGTTTACAGTTTCGGAACACTTTTGCTTGATCTTCTGAGTGGAAAGCATATTCCACCCAGTCATGCACTCGACCTTATACGTGGCAAAAATTTTTCGTTGCTGATGGACTCTTGTTTAGAAGGTCATTTCTCAAATGATGATGGAACTGAGATAGTGAGATTAGCTTCACGTTGTCTACAATATGAACCTCGTGAGAGACCAAATGCAAAGTCACTTGTGACTGCTCTAACTCCTCTTCAGAAAGAAACTTCGGTACTGTCATATGTTTTGATGGGCATACCAGATGGAAGTGTATCATTGAAGGAAACACTTTCCTTTCAAATGTGGACAAATCAAATACAGGAAACTCTGAATTCTAAGAAGCTTGGAGATACTGCTTTTCGTGCTAGAGACTTCTCTACAGCCATTGACTACTACACACAATTCATTGATGTTGGGACCATGGTATCTCCCACTGTGTACGCGAGGCGTTGCTTATGCTACCTTATGAATGACATGCCACAAGAGGCACTCGGAGATGCTATGCAAGCTCAATCAGTATCTCCCACATGGCCGACGGCATACTATCTTCAAGCAGCTGCACTCTTCAGCCTTGGCATGGACAACGATGCTCAGGAAAGTCTTAAAGACGGCACAATATTGGAAACCAGGAAGCATAGAAACTGA 1368 0.4415 MGARCSKLSLCWWPSHIKSNLHDLSDNDDGGKNEKDQWVGFNEYTWDQLKVATSGFSPENIVSEHGEKAPNVVYKGRLEDDRLVAVKRFNKSAWPDSRQFLEEARAVGQLRNERLANLVGCCCEGEERLLVAEFMPHETLSKHLFHWETQPMKWAMRLRVALYLAQALDYCSSRGRALYHDLNAYRILFDEDANPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFSLLMDSCLEGHFSNDDGTEIVRLASRCLQYEPRERPNAKSLVTALTPLQKETSVLSYVLMGIPDGSVSLKETLSFQMWTNQIQETLNSKKLGDTAFRARDFSTAIDYYTQFIDVGTMVSPTVYARRCLCYLMNDMPQEALGDAMQAQSVSPTWPTAYYLQAAALFSLGMDNDAQESLKDGTILETRKHRN 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271905g00036 455 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Stsc271905g00036 455 FunFam probable serine/threonine-protein kinase At4g35230 348 455 - -
Stsc271905g00036 455 Pfam Protein tyrosine and serine/threonine kinase 72 310 IPR001245 GO:0004672|GO:0006468
Stsc271905g00036 455 SUPERFAMILY TPR-like 354 443 IPR011990 GO:0005515
Stsc271905g00036 455 SUPERFAMILY Protein kinase-like (PK-like) 37 317 IPR011009 -
Stsc271905g00036 455 ProSiteProfiles Protein kinase domain profile. 59 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271905g00036 455 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Stsc271905g00036 455 Gene3D Transferase(Phosphotransferase) domain 1 136 327 - -
Stsc271905g00036 455 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Stsc271905g00036 455 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 11 330 IPR045845 GO:0004672|GO:0009742
Stsc271905g00036 455 Gene3D Tetratricopeptide repeat domain 344 453 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271905g00036 Stsc-Chr271905 158941 161975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271905g00036 27 334 Glycoside Hydrolase AT3G07070 32.353 9.60e-42 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Stsc271905g00036 PK_Tyr_Ser-Thr 2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271905g00036 - - gmx:732542 814.298