Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271905g00024 ATGGAGCTTGAAGAAGCTCCAGTCTTGGAAGCAGTTTCCCAGCTGGAAATTGAGATACACAGTGCCTTTAAGGAACCCGATGTTCCTCCAACAACTATCAAGTCAGCTTGCAATTCTGTTTGCCCTTTTTCCAGGCAAGAGAACAGTTTCATAGCGTCCAGAGAGTCATCAAAATCAGCAAAGAAACTTTGTGGACTCATAGTCTTCTATGCCATTGTTATGCTAGTGGAAGCAATTGGTGGAATAAAGGCGAATAGCCTAGCTGTTATCAGCGATGCGGCACACTTGCTTTCTGATATCGGCGGATTCTGCATATCTCTCTTTGCAGTATGGGCTTCTGGCTGGGATGCAACACCGCATCAATCTTTTGGATACAATAGACTTGAAGTTTTAGCTGCTCTTTTATCTGTGCAGATAATTTGGGGGATATCTGGTTTTTTAGTATACGAAGCGATTGGTCGACTTCTGCACCACAGTGCCAGGGTGAATGGAATGCTCATGTTTGCAATTGCAGCATTTGGTTTTGTGTTTAACTTTATTATGGTTGTATGGCTTGGTCATGATCATAGTCATGGTCATGAGCATCATCATGGTCACAATCATAGTCATAGTCATCATCATCATGATTGTGGACACTTGGATCATGATCATGATCATGGGAAGGAGGAACAAGCTAAAGTAACTGATGAAGAGGACCTTAACCTGCTTTCAAGTAGTCAGAGAAATGTTAATGCCTTGAACATAAATCTGCAAGGTGCCTATTTGCATGTCATGACAGATATGATTCAATCTATCGGAGTGATGATTGCTGGAGCCATAATATGGGCTAAACCAGAATGGTTGGTGGTTGATCTTATCTGTACACTCATATTCTCTGTTATATCTTTGGGAACTACCATGCCTATGCTTAGGAGTATTTGTGGCATTCTTATGGAGAGGACACCAAGTGAGATAAATGTCATGAAACTAGAAAATGAACTCAGAAGTTTGAAGGGAGTGCAGGGTATTCATGACCTGCACGTCTGGGCCATAACAGTTGGAAAAACTGTTCTATCTTGTCATGTAGTAGCTGAGTCTGACGTAAATTCCATTGATTTAATTGGCAGGATTAGGGATCATTGTGAAAAAACATATAAAATACAACATGTAACCGTACAAATTGAGTGA 1167 0.4096 MELEEAPVLEAVSQLEIEIHSAFKEPDVPPTTIKSACNSVCPFSRQENSFIASRESSKSAKKLCGLIVFYAIVMLVEAIGGIKANSLAVISDAAHLLSDIGGFCISLFAVWASGWDATPHQSFGYNRLEVLAALLSVQIIWGISGFLVYEAIGRLLHHSARVNGMLMFAIAAFGFVFNFIMVVWLGHDHSHGHEHHHGHNHSHSHHHHDCGHLDHDHDHGKEEQAKVTDEEDLNLLSSSQRNVNALNINLQGAYLHVMTDMIQSIGVMIAGAIIWAKPEWLVVDLICTLIFSVISLGTTMPMLRSICGILMERTPSEINVMKLENELRSLKGVQGIHDLHVWAITVGKTVLSCHVVAESDVNSIDLIGRIRDHCEKTYKIQHVTVQIE 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271905g00024 388 MobiDBLite consensus disorder prediction 194 230 - -
Stsc271905g00024 388 MobiDBLite consensus disorder prediction 207 230 - -
Stsc271905g00024 388 Pfam Cation efflux family 67 311 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Stsc271905g00024 388 SUPERFAMILY Cation efflux protein transmembrane domain-like 60 312 IPR027469 -
Stsc271905g00024 388 Gene3D Cation efflux protein transmembrane domain 59 310 IPR027469 -
Stsc271905g00024 388 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 36 388 - -
Stsc271905g00024 388 NCBIfam cation diffusion facilitator family transporter 61 388 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Stsc271905g00024 388 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 316 388 IPR036837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271905g00024 Stsc-Chr271905 102776 105026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271905g00024 1 388 Inorganic Solute Cotransporters AT2G29410 48.593 2.88e-116 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271905g00024 K14689 - gmx:100777590 508.449