Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271905g00016 ATGGAGAAGGCATCAGATGATGAAGATCATAGAAAAACAAGCAGTGATGGTGGGGATGAAAAAGAAGTAAAAGCAGTGAATGTGAATCATCCAACAACAACAAGATCATATGAATGCAATTTCTGCAAGAGAGGCTTCTCTAATGCACAAGCACTTGGAGGTCACATGAATCTTCATAGGAAGGACAAAGCTAAGATCAAAGAGCAGCAGCAGCAACAACAATATTCTTCTTCCTCTTCTACTTCAAATCAACAATTTTTATTGGAGGGCAATCTCGGTAATCTTAGTCATAATAAAGAGCTTGGGAATGTGCCTCATCAAGCAGTTATGGAAGATGAAACCAAGATGATGAGGCAGCAGTTACCACTCTTTGCAGAATCATCACCTCATCATCATCTTCTTCAACAGCAAGAGGATCAAACTTCTGGTCATGAAGGTCGACGTCCGGAATTAGACCTTGAACTAAGATTAGGGCCTGAGCCGCCACAAGGATCATCTTCATCACCATCACCACCTACAACGGGTGGCAACACTAACCCTACTGGCGAGTATTCAACCCTAGTCAATCCGTTCGAATCGAGTTGTCAACCCTACCCGCTGGACAGAATACATGATCTCTTAATTATAAGAAAAGACCTTAACCATTTAACTATGACTTCAATTTGTATTTTTTATGTATTGAATATGTAA 690 0.4043 MEKASDDEDHRKTSSDGGDEKEVKAVNVNHPTTTRSYECNFCKRGFSNAQALGGHMNLHRKDKAKIKEQQQQQQYSSSSSTSNQQFLLEGNLGNLSHNKELGNVPHQAVMEDETKMMRQQLPLFAESSPHHHLLQQQEDQTSGHEGRRPELDLELRLGPEPPQGSSSSPSPPTTGGNTNPTGEYSTLVNPFESSCQPYPLDRIHDLLIIRKDLNHLTMTSICIFYVLNM 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271905g00016 229 PANTHER OS07G0101800 PROTEIN 20 161 - -
Stsc271905g00016 229 MobiDBLite consensus disorder prediction 169 186 - -
Stsc271905g00016 229 MobiDBLite consensus disorder prediction 1 26 - -
Stsc271905g00016 229 MobiDBLite consensus disorder prediction 69 84 - -
Stsc271905g00016 229 MobiDBLite consensus disorder prediction 62 84 - -
Stsc271905g00016 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Stsc271905g00016 229 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Stsc271905g00016 229 MobiDBLite consensus disorder prediction 154 186 - -
Stsc271905g00016 229 MobiDBLite consensus disorder prediction 129 148 - -
Stsc271905g00016 229 MobiDBLite consensus disorder prediction 1 30 - -
Stsc271905g00016 229 Gene3D Classic Zinc Finger 13 91 - -
Stsc271905g00016 229 SUPERFAMILY beta-beta-alpha zinc fingers 33 64 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271905g00016 Stsc-Chr271905 77609 79096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271905g00016 34 170 C2H2 Transcription Factor Family AT3G53820 32.877 8.46e-16 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc271905g00016 zf-C2H2_6 2.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271905g00016 - - adu:107477079 177.948