Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271905g00008 ATGGGCGAGGAAGTTAGGACCACCGACTACCAGGTCGATGACCGTCTCGCAGACTGGGAATTGGGCCTTCCTGCGGCCCACGATCTCACCCCTCTCTCTCAGCTCTTGATCCCGCCGGAGCTCGCCTCCGCCTTCAGCATCTCGCCGGAGCCACACCGTTCCCTCGTCGACGTCAACCGCGCCTCCAAGAACACTCTCTCCACCCTCCGTACCGGCGTCAACGCCTTCTCCTCCTCCAACCTCAACCCTTTCCAAGACGAAGGAAACGATCCTGCCGGCGACGACGACGACGACGAAGAGATCGATCCGAACGGTTCGGGCTCCAATTCGAGGAAGCTCCGGAAGATCGATTGTGCGGAGGAGGCGGATTCGGCGCCGCGCAACGACGGTGCCGCCGCCGTGAAGCGACCGAGGCTGGTGTGGACGCCGCAGCTGCACAAGCGGTTTGTGGACGTGGTGGCGCACCTAGGGATCAAGAACGCGGTGCCGAAGACGATCATGCAGCTTATGAACGTGGAAGGGTTGACCAGAGAGAACGTCGCTAGCCACCTCCAGAAGTATCGCCTCTACCTTAAGCGGATGCAAGGGCTCTCCACCGACGGACCTTCTTCCTCCGACCACCTCTTCGCCTCCACGCCAGTTCCTCAAAGCCTCAACGACAGCGGCGGTGGAGGAGGAGGTGGAAGTGGTCACTCCCGTGGGAACGGACACCTTCCGGTTCCGGTCCCGATGCATTATCCTCCGGCGGCGATGATGCAAATGCCGATGCTGGGCATGGCACATGGCTATCATCATCACCACGTGTTGCAGCAGAGGGATTGGTCCTACCCACATCATGTCACTCCTAATGATAAATGA 858 0.6049 MGEEVRTTDYQVDDRLADWELGLPAAHDLTPLSQLLIPPELASAFSISPEPHRSLVDVNRASKNTLSTLRTGVNAFSSSNLNPFQDEGNDPAGDDDDDEEIDPNGSGSNSRKLRKIDCAEEADSAPRNDGAAAVKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSTDGPSSSDHLFASTPVPQSLNDSGGGGGGGSGHSRGNGHLPVPVPMHYPPAAMMQMPMLGMAHGYHHHHVLQQRDWSYPHHVTPNDK 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271905g00008 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 192 IPR017930 -
Stsc271905g00008 285 MobiDBLite consensus disorder prediction 198 223 - -
Stsc271905g00008 285 SUPERFAMILY Homeodomain-like 134 193 IPR009057 -
Stsc271905g00008 285 MobiDBLite consensus disorder prediction 89 103 - -
Stsc271905g00008 285 FunFam Two-component response regulator 132 195 - -
Stsc271905g00008 285 NCBIfam myb-like DNA-binding domain, SHAQKYF class 137 189 IPR006447 GO:0003677
Stsc271905g00008 285 MobiDBLite consensus disorder prediction 198 242 - -
Stsc271905g00008 285 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 12 266 IPR044841 GO:0003700|GO:0006355
Stsc271905g00008 285 Pfam Myb-like DNA-binding domain 140 188 IPR001005 -
Stsc271905g00008 285 Gene3D - 133 195 - -
Stsc271905g00008 285 MobiDBLite consensus disorder prediction 77 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271905g00008 Stsc-Chr271905 49483 51176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271905g00008 1 266 G2-like Transcription Factor Family AT3G46640 54.480 8.56e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc271905g00008 Myb_DNA-binding 1.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271905g00008 - - aprc:113858844 377.096