Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271905g00007 ATGAACTTCGAAACGCAACCTGGAACGGCGTCGTTTTGGTGTTACAGCTGCACAACCTTCGTTCATATCATGGACCAAACCGACAACGTCCTCTGCCCTAACTGCCAAAGCGGTTTCGTTGAACAGATCCGACCCGAACCCTCTCCGGATCACTTTTTCAGCCCCTTATCCGACGTCTCCGATTCCCGGCGCCAAGGCTTCCGCCGTCGCCGCCGCAGTACTGCTGGAAGTCGCTCTCCTTTCAATCCTGTGATTGTTCTGCGTGGCCCCACCGATGATGCCGATCGTGAAGGTGGTGCTGCCTTCGAGCTATACTACGACGACGGCGACGGTACCGGTTTACGGCCTCTTCCGCCGGCTATTGCGGAGTTTCTGTTAGGTTCGGGATTTGACCGGCTTTTGGAGCAGTTCTCGCAGATCGAGACGAACGCGTTTGGTCGGCCGGAGAATCCGCCGGCTTCTAAGGCGGCGATAGAGTCGATGCCTTCGGTGGAGATTGCGGAGGCGCACGTGCATGCGGAAGCGCACTGCGCCGTGTGTAAGGAAGCATTTGAGCTGCAGGCGGAGGCGCGTGAGCTTCCATGTAAGCACATATACCACACCGATTGCATCGTTCCGTGGCTTTCGATTCGGAATTCTTGCCCTGTTTGTCGACACGAGCTTCCTTCAGATCACAATTCGTTGATGTCTGGTTCAATCGATGAGGAATCGATTGGATTAACGATTTGGAGGCTGCCGGGAGGGGGATTCGCCGTCGGTAGGTTTTCTGGTGGCCGGAGAGCCGGCGAGAATCACCTTCCCGTGGTGTACACGGAGATGGACGGAGCACTGAACCCTAACGGAGCTCCGAGGAGGATTTCTCGTTCTGTGAGGAACATTAGGGTTAGGGAGAGTCGTGGAGTTGGTCGGGTTTTTCGAAATTTCATGTCTATTTTTGGAAGATTGGGCTCCAGCAGGTCTAGATTTTTTGGTACCGAACGAGTTTCGCTGAGATCGGTTTTCAATAGGAACTCGCGGAGGCGAACATGGAGAGTTGAAGATTGA 1044 0.546 MNFETQPGTASFWCYSCTTFVHIMDQTDNVLCPNCQSGFVEQIRPEPSPDHFFSPLSDVSDSRRQGFRRRRRSTAGSRSPFNPVIVLRGPTDDADREGGAAFELYYDDGDGTGLRPLPPAIAEFLLGSGFDRLLEQFSQIETNAFGRPENPPASKAAIESMPSVEIAEAHVHAEAHCAVCKEAFELQAEARELPCKHIYHTDCIVPWLSIRNSCPVCRHELPSDHNSLMSGSIDEESIGLTIWRLPGGGFAVGRFSGGRRAGENHLPVVYTEMDGALNPNGAPRRISRSVRNIRVRESRGVGRVFRNFMSIFGRLGSSRSRFFGTERVSLRSVFNRNSRRRTWRVED 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271905g00007 347 CDD RING-H2_RNF126-like 177 218 - -
Stsc271905g00007 347 Pfam zinc-ribbon 11 43 IPR039525 GO:0061630
Stsc271905g00007 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 54 222 - -
Stsc271905g00007 347 SUPERFAMILY RING/U-box 157 224 - -
Stsc271905g00007 347 SMART ring_2 177 217 IPR001841 -
Stsc271905g00007 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 224 IPR013083 -
Stsc271905g00007 347 MobiDBLite consensus disorder prediction 46 92 - -
Stsc271905g00007 347 FunFam E3 ubiquitin-protein ligase RING1-like 139 224 - -
Stsc271905g00007 347 Pfam Ring finger domain 176 218 IPR001841 -
Stsc271905g00007 347 ProSiteProfiles Zinc finger RING-type profile. 177 218 IPR001841 -
Stsc271905g00007 347 Pfam Protein of unknown function (DUF1117) 238 323 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271905g00007 Stsc-Chr271905 39003 40046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271905g00007 116 231 C3H Transcription Factor Family AT5G01980 46.552 1.61e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271905g00007 K11982 - gmx:100792874 466.463