Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271904g00008 ATGTCGATCTCGTACTCCGACTTCTTCTCCGACTCCGACCTTTTCTGCGCCGAGGACACCTCCGGAATCATCTCCGAAGATTTGCCGGAATCCTCCTCCTCCTTCTCCGACTTAGGTTCCTTATCTCCGCCACTGCCACCGATGGAGGTGGAGGAGACGGAATCCATAGCCGGATTCCTCGAAGACGAAAGAAACTTCGTCCCTGGATTCGAGTACCTCACGAGGTTCCAATCTCACTCGCTGGATGCCTCGGCAAGAGAAGAATCCGTTGCCTGGATTCTCAAGGTGCAGGCTTATTACGGATTTCAGCCGTTGACGGCGTATCTTTCCGTCAACTACATGGATCGATTCTTGAACTCTCGGCAGTTGCCGCAAAGAAATGGGTGGCCGCTGCAACTTCTATCTGTTGCATGCTTGTCTCTAGCGGCAAAGATGGAAGAGCCTCTTGTCCCTTCTCTCTTGGACCTTCAGGTAGAAGGTGCCAAATACATATTTGAGCCCAGAACAATTCAAAGGATGGAGCTGCTTGTTCTGGGAGCCTTGGATTGGAGGCTAAGATCAATCACCCCATTTAGCTTCCTTGGCTTCTTTGCTTGCAAGTTGGATTCAACTGGAACTTTTACTACATTCCTCACTTCACGCGCTACACAAATCATATTATCCAATCTCCAAGAGGCTAGCTTTCTTGCATACTGGCCATCATGCATTGCTGCAGCGGCCATTCTATGTGCAGCTAACGAAATTCCAAATTGGTCCCTCGTTAAGCCTGAGCATGCCGAATCCTGGTGCCAGGGGCTCACAAAAGAGAAAATTAAAGGTTGCTACCAATTGATGCAAGAGCTACTTGTGATTGATAATACTAGTCAGAGGAAGGCTCCTAAGGTGTTACCACAGCTGCGAGTGATGACATCTCGGCCCCTAACAAGGTCAAGTGCTTCCTCATTCTTATCATCCTCGCCGTCATCGTCGTCATCTTCCTCTTCCTCTTCCTCTTCCTCTATTTCATCCTCTGCATCATTCTCATTGTCTTATAAAAGGAGGAAGTTGGATAACTGTTTGTGGGTAGATGATCACAAGGGAAACGCCCCTTAA 1092 0.4853 MSISYSDFFSDSDLFCAEDTSGIISEDLPESSSSFSDLGSLSPPLPPMEVEETESIAGFLEDERNFVPGFEYLTRFQSHSLDASAREESVAWILKVQAYYGFQPLTAYLSVNYMDRFLNSRQLPQRNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQVEGAKYIFEPRTIQRMELLVLGALDWRLRSITPFSFLGFFACKLDSTGTFTTFLTSRATQIILSNLQEASFLAYWPSCIAAAAILCAANEIPNWSLVKPEHAESWCQGLTKEKIKGCYQLMQELLVIDNTSQRKAPKVLPQLRVMTSRPLTRSSASSFLSSSPSSSSSSSSSSSSSISSSASFSLSYKRRKLDNCLWVDDHKGNAP 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271904g00008 363 Gene3D - 69 186 - -
Stsc271904g00008 363 SMART Cyclin_C_2 188 324 IPR004367 -
Stsc271904g00008 363 MobiDBLite consensus disorder prediction 311 342 - -
Stsc271904g00008 363 Pfam Cyclin, N-terminal domain 59 185 IPR006671 -
Stsc271904g00008 363 CDD CYCLIN_AtCycD-like_rpt1 85 183 - -
Stsc271904g00008 363 Gene3D - 59 275 - -
Stsc271904g00008 363 Pfam Cyclin, C-terminal domain 188 291 IPR004367 -
Stsc271904g00008 363 SUPERFAMILY Cyclin-like 170 286 IPR036915 -
Stsc271904g00008 363 FunFam D2/4-type cyclin 69 186 - -
Stsc271904g00008 363 SUPERFAMILY Cyclin-like 55 185 IPR036915 -
Stsc271904g00008 363 CDD CYCLIN_AtCycD-like_rpt2 188 278 - -
Stsc271904g00008 363 ProSitePatterns Cyclins signature. 86 117 IPR006671 -
Stsc271904g00008 363 SMART cyclin_7 91 179 IPR013763 -
Stsc271904g00008 363 PANTHER CYCLINS 49 286 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271904g00008 Stsc-Chr271904 62178 66163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271904g00008 1 357 Core Cell Cycle Gene Families AT1G70210 57.103 1.46e-126 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271904g00008 K18810 - gmx:100775224 481.1