Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271903g00023 ATGTCGCAACAAGAATACGGTTACGCAATCGAACTGTACTTGGACCCGGCCCTCGAGAACCAGGTGCTGAAAGCATGGAACGCCCTCGCACGCCGCCAAATCAGCACTCACCTAATCGACATGGAGTCTCGCCCTCACATCACTCTCTTCTCTTTCCCTTCTTCTTCTTCACTCGACCCTTCCAAATTCGACTCCATCCTCGAAACCTTCGCTTCAAAGCAAGACCCTCTCCCCCTCTCTTTCTCCGCCATCGGCTCTCTCTCCGGCGACTCCAACCTCCTCTTCCTCTCCCCCACTCCCACTCTCTCCCTCTTGCACCTCCACTCTCACCTCTCCGACGCCCTCCGCAAAGAAGGCATCGACGTTCCCGCTGACTATTCCGTTGACAATTGGATCCCTCACTGCTCCGTCGCCAAGCATGTTCCCAAGCCCAGAATGGCCGAGGGATTCTCTGTTTTGAGGGATTTGAAGCTTCCTGTTACTGGCTACGCTGTTGACATTGCTCTCGTTGAGTTTTCGCCTGTTCGCGAGCTCTTCTCCTTTGTTCTCGGCACTGCTGCTGGATCTTGA 570 0.5474 MSQQEYGYAIELYLDPALENQVLKAWNALARRQISTHLIDMESRPHITLFSFPSSSSLDPSKFDSILETFASKQDPLPLSFSAIGSLSGDSNLLFLSPTPTLSLLHLHSHLSDALRKEGIDVPADYSVDNWIPHCSVAKHVPKPRMAEGFSVLRDLKLPVTGYAVDIALVEFSPVRELFSFVLGTAAGS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271903g00023 189 SUPERFAMILY LigT-like 6 140 IPR009097 -
Stsc271903g00023 189 Gene3D Cyclic phosphodiesterase 7 184 - -
Stsc271903g00023 189 Pfam 2'-5' RNA ligase superfamily 44 170 - -
Stsc271903g00023 189 PANTHER - 6 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271903g00023 Stsc-Chr271903 152486 155447 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271903g00023 7 189 Calmodulin-binding Proteins AT5G40190 64.481 1.50e-79 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271903g00023 - - mnt:21391761 238.424