Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271902g00015 ATGGGTTTTGAACTACAGATACGAGAGATAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCCACTATGCCTGTGGAGATTGAAGCATTAGCAAAGGAATACTTGGCTAATCCTGTACAAGTCAAAGTTGGAAAAGTCAGTAGCCCAACAACAAATGTTTCGCAAACACTCGTGAAGGTCTCTGAAAATGAGAAGATTGATCGTCTTCTAGATTTGCTTGTAGAAGAGGCGTCGCAGGCTGAAAAATGTGGTCATCCATTTCCACTTACGATAGTGTTTGTTGAAAGAAAGACAAGATGTGATGAAATTGCTGAGGCACTCGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGCCGCAGTCAAAGTGAAAGAGAGGCTGCCCTGCATGATTTTCGGACTAGCACCACCAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACCGGAGTGTCACATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCAGGAACAACAGGCCTATCAACTTCATTTTACACTGATCGAGACATGTTTCTCGTGGCAAATATAAGGAAAGCAATTGCTGATGCTGAATCTGGGAACACAGTGGCATTTGCAACTGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCCGCACAAAAAGAGGCAAATATTGCTTTATCCAAACAATTTGGATTGGGACCAGCTTCAATTAACATTGAAGATAAATATAGGTTTATGATTACTACCTCAAACATTAAAAAAGTAGGTGCAGCTGATAGTGCTTGGGATGATTAG 852 0.4237 MGFELQIREIMRNLPEKHQTLLFSATMPVEIEALAKEYLANPVQVKVGKVSSPTTNVSQTLVKVSENEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQSEREAALHDFRTSTTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGTTGLSTSFYTDRDMFLVANIRKAIADAESGNTVAFATGKVARRKEKEAAAAQKEANIALSKQFGLGPASINIEDKYRFMITTSNIKKVGAADSAWDD 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271902g00015 283 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 69 227 IPR001650 -
Stsc271902g00015 283 Gene3D - 1 52 IPR027417 -
Stsc271902g00015 283 Pfam Helicase conserved C-terminal domain 69 186 IPR001650 -
Stsc271902g00015 283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 206 IPR027417 -
Stsc271902g00015 283 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 205 - -
Stsc271902g00015 283 CDD SF2_C_DEAD 57 195 - -
Stsc271902g00015 283 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 45 IPR014001 -
Stsc271902g00015 283 SMART helicmild6 105 186 IPR001650 -
Stsc271902g00015 283 Gene3D - 53 245 IPR027417 -
Stsc271902g00015 283 Coils Coil 227 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271902g00015 Stsc-Chr271902 74191 77863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271902g00015 2 208 Eukaryotic Initiation Factors Gene Family AT3G19760 34.450 9.23e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271902g00015 K12823 - gmx:100787545 488.419