Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271902g00012 ATGGCTGATGAACCACAAATCGATATGAAGGAGGAGGTTCCAGAGATTACCCCATTTGATCCTACTAAGAAGAAGAAGAAAAAGAAAACTACAATCATAGATCCTGCAGATGATCTGGACAAGCTGGCTGAGAAGACTGAAAATTTAACAGTGGCTGAAGGAGTTGAGACTACATTTGCTGGTTTGAAAAAGAAGAAGAAGAAGCCTGTTGAAATCAGCAACTTAAATGAAGAGAGTGGAGATGCAGTTGATGATTTGGATGATGTTGCTGAACAAGATGAAGGAGATGCAATTTCCTTGCAGCCTCGTTATCCTTGGGAAGGGAGTGACCGTGATTATAAATATGAGGAGCTTCTTGGCAGGGTGTTCAACATTCTACGTGAGAATAATCCAGAACTTGCTGGAGACAGGCGGAGGACTGTTATGAGACCTCCACAGGTTCTTCGTGAGGGCACAAAGAAAACTGTTTTTGTGAATTTCATGGACCTATGCAAAACGATGCATCGACAACCAGACCATGTTATGGCTTTCTTGCTTGCTGAACTTGGTACAAGTGGCTCTTTGGATGGACAGCAAAGATTGGTTGTGAAGGGAAGATTTGCACCCAAGAACTTTGAAGGAATTCTGCGACGATATATCAATGAATATGTCATTTGCATTGGATGTAAAAGTCCCGACACAATACTTTCTAAGGAGAATCGTCTGTTCTTCCTTCGATGTGAGAAGTGTGGATCCGGAAGATCAGTTGCTCCAATCAAGGCCGGTTTCGTGGCTCGTGTTGGTCGCAGGAATGCCGGCACATAA 804 0.4328 MADEPQIDMKEEVPEITPFDPTKKKKKKKTTIIDPADDLDKLAEKTENLTVAEGVETTFAGLKKKKKKPVEISNLNEESGDAVDDLDDVAEQDEGDAISLQPRYPWEGSDRDYKYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYINEYVICIGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNAGT 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271902g00012 267 SMART eIF2Bneu4 137 246 IPR002735 GO:0003743|GO:0006413
Stsc271902g00012 267 MobiDBLite consensus disorder prediction 1 31 - -
Stsc271902g00012 267 Pfam Domain found in IF2B/IF5 136 245 IPR002735 GO:0003743|GO:0006413
Stsc271902g00012 267 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 216 251 IPR016190 GO:0003743|GO:0006413
Stsc271902g00012 267 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 116 266 IPR045196 GO:0003743|GO:0006413
Stsc271902g00012 267 MobiDBLite consensus disorder prediction 1 22 - -
Stsc271902g00012 267 Gene3D - 110 252 - -
Stsc271902g00012 267 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 112 219 IPR016189 GO:0003743|GO:0006413
Stsc271902g00012 267 FunFam Eukaryotic translation initiation factor 2 subunit 110 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271902g00012 Stsc-Chr271902 61561 65317 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271902g00012 1 263 Eukaryotic Initiation Factors Gene Family AT5G20920 76.030 1.65e-137 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271902g00012 K03238 - gmx:100783618 470.314