Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271902g00011 ATGGCTGATGAACTACCAATCGATATGTACGAGGGTGTTGCAGAGCTTTTTGGCGGCGGAGACAGGCGGCGAACTGTTTTGAGCCCTCCACAGGTTCTTCGTGAGGGCACAAAGAAAACTGTTTATCTGAATTTTATGGACCTATGCAACACGATACATCGACAACCAGACCATGTTATGGCTTTCTTGCTTGCTGAACTTGGTACAAGTGGCTCTTTGGATGGACAGCAAAGATTGGTTGTGAAGGGAAGATTTGCACCCAAGAACTTTGAAGGAATTCTGCGACGATATATCAATGAATATGTCATTTGCCTTGGATGTAAAAGTCCTGACACAATAATTTCAAAGGAGAAATCACAGTTCTTCCTTCGATGTGAGAAGTGTGGATATCGAAGATTTGTTGTTCGTGTTGGCCGTAGGAAATGCCGCATATAA 435 0.4345 MADELPIDMYEGVAELFGGGDRRRTVLSPPQVLREGTKKTVYLNFMDLCNTIHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYINEYVICLGCKSPDTIISKEKSQFFLRCEKCGYRRFVVRVGRRKCRI 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271902g00011 144 Gene3D - 8 136 - -
Stsc271902g00011 144 SMART eIF2Bneu4 22 131 IPR002735 GO:0003743|GO:0006413
Stsc271902g00011 144 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 20 134 IPR045196 GO:0003743|GO:0006413
Stsc271902g00011 144 Pfam Domain found in IF2B/IF5 22 130 IPR002735 GO:0003743|GO:0006413
Stsc271902g00011 144 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 101 134 IPR016190 GO:0003743|GO:0006413
Stsc271902g00011 144 FunFam Eukaryotic translation initiation factor 2 subunit 8 137 - -
Stsc271902g00011 144 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 21 104 IPR016189 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271902g00011 Stsc-Chr271902 57579 59811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271902g00011 19 142 Eukaryotic Initiation Factors Gene Family AT5G20920 78.788 8.46e-73 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271902g00011 K03238 - thj:104804533 218.394