Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271902g00008 ATGTCCGTACAATCCACCCTGAAGCTTCAGAATCTGGCAACAGGAAGCTCAAGGTTCGATTTTGAAGAGGACCCACCATGCAAAACCGCAAAAAAGCTTCCACCCAAGAAGCTCCTCCGGATCATACTCACCGATCCCGACGCCACCGATTCAGAATCTTCCAACGATGAAGCTGAACACCAAAACCCATCACCGAGGGTAAAAAGGGAAATTATCACTCACATAATCACCCCTCGCCTTCACTCTCCGCATTCTTCTTCCCCAACCGCTTCTTCTTCATCGCCTTCTTCTCCTTCAATCGGTTCGGGTCAAAACCTGTCTGACCCGAACCGGTTCAAGAGGAAACTTAAACGCTCTGTTTCTGGTTCTAGAAGGTTCCGTGGCGTTCGCCAGAGACCGTGGGGAAGGTGGACGGCGGAGATCCGAGATCCGACCCGAAGAAAACGGGTTTGGTTGGGCACTTTTGACACGGCGGAGGAGGCCGCGGCCGTGTACGACGCTGCAGCGGTGAGGTTCAAGGGTCCTGGTGCCGCTATCAACTTCCCCCGTAGCGATTCCGAAGTTTCCGGCGAGAGTTTTGCGGCGGTTTCCGGTGAGGGTTTTGTGGCGGTTTCTGGAGGTAGAGAGGGTTTTGCCTCTCCGACTTCGGTTCTTGCTTACGATGACGGCGTTGTTGGGGGTTGTGAGGCGACGCCGTTTGAGATTCTCCGTTACGGCGATGTGGATGCTTTCGGTTTTGATATTGACGTGCCGTTAAATTTAACGGACGTTAACTCGGTGCTGACTCAGCGGTTTGGGAAGGAAGAGTTCAGCGAGTTTGACCCGGAAGATTTCCTGACGTGGCCTGAATAG 852 0.534 MSVQSTLKLQNLATGSSRFDFEEDPPCKTAKKLPPKKLLRIILTDPDATDSESSNDEAEHQNPSPRVKREIITHIITPRLHSPHSSSPTASSSSPSSPSIGSGQNLSDPNRFKRKLKRSVSGSRRFRGVRQRPWGRWTAEIRDPTRRKRVWLGTFDTAEEAAAVYDAAAVRFKGPGAAINFPRSDSEVSGESFAAVSGEGFVAVSGGREGFASPTSVLAYDDGVVGGCEATPFEILRYGDVDAFGFDIDVPLNLTDVNSVLTQRFGKEEFSEFDPEDFLTWPE 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271902g00008 283 CDD AP2 125 182 IPR001471 GO:0003700|GO:0006355
Stsc271902g00008 283 MobiDBLite consensus disorder prediction 1 17 - -
Stsc271902g00008 283 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 36 187 - -
Stsc271902g00008 283 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Stsc271902g00008 283 MobiDBLite consensus disorder prediction 79 109 - -
Stsc271902g00008 283 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Stsc271902g00008 283 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Stsc271902g00008 283 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Stsc271902g00008 283 SUPERFAMILY DNA-binding domain 125 183 IPR016177 GO:0003677
Stsc271902g00008 283 Gene3D AP2/ERF domain 124 183 IPR036955 GO:0003700|GO:0006355
Stsc271902g00008 283 MobiDBLite consensus disorder prediction 1 127 - -
Stsc271902g00008 283 Pfam AP2 domain 125 173 IPR001471 GO:0003700|GO:0006355
Stsc271902g00008 283 FunFam Ethylene-responsive transcription factor 2 124 183 - -
Stsc271902g00008 283 PIRSF PTI6 3 283 IPR017392 GO:0003700
Stsc271902g00008 283 MobiDBLite consensus disorder prediction 53 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271902g00008 Stsc-Chr271902 33446 35331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271902g00008 37 224 AP2-EREBP Transcription Factor Family AT4G27950 43.719 3.48e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc271902g00008 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271902g00008 K13434 - gmx:102660028 241.121