Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271902g00001 ATGAAGGCTGTGAAAGTTTACTCTGAATTCAGTTGTCCATATAGAAAACAACTCTCCATGAAGTTCATTTCTAGATCAGTGTCTCCTTTCTTGTTCATCATAGTTTTTCTTTTCCCACTGTCTATTATTGCTGCTGATCTAAGCTCAGACAAGCAAGCTCTTCTTGATTTCGCTAATGCCATTCCTCACCGGCGAAATCTTCAGTGGAATCCTGCATCCTCAATTTGTACATCTTGGGTAGGCATTACTTGCAATCAAAATGGAACTCGTGTTATTTCGGTCCGGCTCCCCGGAGTTGGACTAGTCGGCACCATTCCAACCAACACACTTGGCAAGCTTGATGCTGTAAAAATCATTAGCCTTCGATCCAACCTACTTGGGGGAAATCTGCCTGCTGATATTGCTTCCCTTCCTTCTCTCCAGTTTCTTTATCTGCAGCATAACAACCTTTCAGGTGATATACCTTCCTCATTGTCAACTCAACTCAATGTACTCGATTTATCATATAACGCCTTCACCGGAAGCATTCCAAAGACCCTGCAAAATTTGACAGAATTAACTAGTTTGAATCTCCAGAACAACTCACTATCTGGAGAGATACCTAATCTCAATGCTACCAGTCTTAGGAATTTGAATTTAAGCTACAACCATTTGAATGGTTCTATCCCTTCAGCTCTTCAGGATTTTCCCAACTCCTCTTTTGAAGGAAACATTCAGTTATGTGGTCCACCTTTAAAGGCATGCTCCGGGGTTCCACCTGCAGCTCCGCCGGCTGTGACACCAGCTCCACGGCCATCGATTGGAAGATCAAAGAATAAACTGAGTAAAGTAGCTATTATTGCAATTGCTGTTGGAGGAGGTGTGCTGCTATTTCTTGTAGCTCTTGTTATTGTTGTTTGCTGTGTAAAGAAGAAAGATGAGGAGGAAGAAGCCCCTAGTACAATAAAAGGGAAGAGTTCTGTTGGAGGTAGGGGCGAGAAGCCTAAAGAGCAGTTCGGTAGTGGAGTGCAAGAACCTGAGAAGAACAAGCTGGTTTTCTTTGAGGGAAGCTCTTACAACTTTGATCTTGAGGATTTGCTAAGAGCTTCGGCCGAGGTTTTGGGAAAAGGTAGTTATGGAACTGCATACAAGGCTATACTAGAGGAGTTGACGACAGTTGTGGTGAAAAGGTTGAAGGAAGTTGTGGTGGGTAAGAAGGACTTTGAGCAGCAGATGGAGATCATTGGAAGGGTTGGACAACACCAAAATGTGGTGCCTCTTCGTGCTTATTATTATTCGAAAGATGAAAAGCTTCTGGTTTATGACTATATCCCCAGTGGCAACTTATCCTCACTCTTGCATGGCAACAGGTCAGGAGGAAGAACTCCATTAGATTGGGACACACGTCTGAAAATCACTCTCGGAACAGCCAGAGGACTTGCTCACCTTCATTCTGTTGGTGGTCCGAAATTCGCACATGGAAATATTAAGTCCTCAAATGTCCTAATCAACCAAGATAAAGATGGCTGCATTTCTGATTTCGGCCTAGCCCCTCTTATGAATGTGCCTGTATCACCTTCTAGAGCAGTAGGTTACCGTGCACCGGAGGTGGTTGAGACCCGAAAGCACTCTCATAAATCAGATGTGTACAGCTTTGGTGTCCTACTGCTTGAGATGCTTACCGGGAAAGCGCCACTTCAGTCTCCCGGACGCGAGGACATGGTTGATCTGCCTAGGTGGGTCCAATCTGTTGTTAGGGAAGAATGGACTGCCGAGGTTTTCGACGTGGAGTTAATGAGGTACCAAAACATTGAAGAAGAAATGGTTCAAATGCTTCAAATAGCCATGGCCTGTGTAGCAAAGATGCCGGATATGCGGCCAAACATGGATGAAGTGATGAGAATGATAGAAGAGGTCCGGCAATCTGACTCGGAGAACCGGCCATCTTCCGAAGAGTATAAATCCAAAGACTCAAATGTTCAAACTCCATAA 1971 0.4439 MKAVKVYSEFSCPYRKQLSMKFISRSVSPFLFIIVFLFPLSIIAADLSSDKQALLDFANAIPHRRNLQWNPASSICTSWVGITCNQNGTRVISVRLPGVGLVGTIPTNTLGKLDAVKIISLRSNLLGGNLPADIASLPSLQFLYLQHNNLSGDIPSSLSTQLNVLDLSYNAFTGSIPKTLQNLTELTSLNLQNNSLSGEIPNLNATSLRNLNLSYNHLNGSIPSALQDFPNSSFEGNIQLCGPPLKACSGVPPAAPPAVTPAPRPSIGRSKNKLSKVAIIAIAVGGGVLLFLVALVIVVCCVKKKDEEEEAPSTIKGKSSVGGRGEKPKEQFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEELTTVVVKRLKEVVVGKKDFEQQMEIIGRVGQHQNVVPLRAYYYSKDEKLLVYDYIPSGNLSSLLHGNRSGGRTPLDWDTRLKITLGTARGLAHLHSVGGPKFAHGNIKSSNVLINQDKDGCISDFGLAPLMNVPVSPSRAVGYRAPEVVETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPGREDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKMPDMRPNMDEVMRMIEEVRQSDSENRPSSEEYKSKDSNVQTP 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271902g00001 656 ProSiteProfiles Leucine-rich repeat profile. 185 207 IPR001611 GO:0005515
Stsc271902g00001 656 ProSitePatterns Protein kinases ATP-binding region signature. 367 398 IPR017441 GO:0005524
Stsc271902g00001 656 Pfam Leucine rich repeat N-terminal domain 48 85 IPR013210 -
Stsc271902g00001 656 MobiDBLite consensus disorder prediction 631 647 - -
Stsc271902g00001 656 PANTHER OS05G0588300 PROTEIN 31 644 - -
Stsc271902g00001 656 ProSiteProfiles Protein kinase domain profile. 361 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271902g00001 656 Gene3D Phosphorylase Kinase; domain 1 329 436 - -
Stsc271902g00001 656 SUPERFAMILY L domain-like 51 243 - -
Stsc271902g00001 656 FunFam Leucine-rich repeat receptor-like protein kinase 49 159 - -
Stsc271902g00001 656 Pfam Leucine Rich Repeat 207 227 IPR001611 GO:0005515
Stsc271902g00001 656 FunFam Leucine-rich repeat receptor-like protein kinase 160 248 - -
Stsc271902g00001 656 FunFam pollen receptor-like kinase 1 329 436 - -
Stsc271902g00001 656 Gene3D Ribonuclease Inhibitor 47 203 IPR032675 -
Stsc271902g00001 656 MobiDBLite consensus disorder prediction 311 336 - -
Stsc271902g00001 656 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 437 643 - -
Stsc271902g00001 656 Pfam Protein kinase domain 364 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271902g00001 656 Gene3D Transferase(Phosphotransferase) domain 1 437 654 - -
Stsc271902g00001 656 Gene3D Ribonuclease Inhibitor 204 249 IPR032675 -
Stsc271902g00001 656 MobiDBLite consensus disorder prediction 631 656 - -
Stsc271902g00001 656 SUPERFAMILY Protein kinase-like (PK-like) 365 639 IPR011009 -
Stsc271902g00001 656 CDD STKc_IRAK 367 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271902g00001 Stsc-Chr271902 4793 8387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271902g00001 19 654 Receptor kinase-like Gene Family AT5G58300 66.977 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc271902g00001 Pkinase 3.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271902g00001 - - gmx:100796171 1015.37