Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271901g00003 ATGGAACTTCATAAGCGCCGCGTCCACAGCCTCTCCGAGAGGAAGGGCCAGAAGCGCAAGCTTGATGACCAGCTCCACGCCAACCGCCAGATCTCGCCGCCGCTGCTCACGGCCGACGAGCGCGCCGCTATCCTCTCTCAAGTATCTGACCAGGTCCGTGTCCTCGACTCCACCTTCACGTGGAATGAAGCCGATCGAGCTGCCGCCAAGCGCGCCACCCACGCGCTTGCCGATCTCGCCAAGAACGAGGAAGTTGCTAACGTGATTGTCGAAGGAAGCGCTATTCCAGCTCTGGTTAGGCATCTTCAGGCGCCGCCTATGGGCGACGATGACCTTGTGCAGAAGCCGTTACCGTTTGAGCATGAGGTTGAGAAAGGAAGCGCTTTCGCACTAGGACTTCTTGCCGTCAAGCCAGAACATCAACAGCTCATAGTTGACTGTGGTGCCTTGACTCATCTTGTTGATCTTTTAAAGAGGCATAAGAATGGTTTAACTTCTCGTGCCATTAATAGTCTCATTCGTAGAGCTGCAGATGCCATCACTAATCTTGCTCATGAAAACAGCAGCATTAAAACTCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTGAATTTGCTTGAATTTGCAGATCCAAAAGTACAAAGAGCAGCTGCTGGTGCACTGCGAACCCTGGCTTTCAAAAATGATGAAAATAAAAATCAGATCGTTGAATGCAATGCTCTTCCAACTCTGATTCTAATGCTTCGCTCTGAAGATATAGCTATTCATTTTGAAGCGGTTGCTGTGATTGGAAATCTGGTACACTCTTCCCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAGCCGGTTATTGGATTACTTAGCTCGTGCTGCTCTGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGACAGTTTGCATCAACTGATTCAGATTGTAAGGTTCACATTGTACAGAGAGGTGCTGTCCAGCCTTTGATAGAGATGCTTCAATCTCCAGATGTACAACTCCAAGAAATGTCTGCCTTTGCATTAGGGAGATTAGCCCAGGACACACATAACCAAGCTGGCATTGCACATAATGGTGGCTTAGTGCCATTGCTCAACCTTCTTGATTCCAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCACTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTTGGTGGAGTTCAGAGGTTGCAGGAAGGAGAGTTTATTGTTCAAGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAGGAGAAAATCCATGGCCGTGTGCTGAAGCATTTGCTATATCTTATGCGAGTTTCAGAAAAGGGTTTGCAAAGGCGTGTTGCTTTGGCTCTTGCACATCTTTGTTCAGCAGATGATCAAAGAGGGATTTTTATGGAACACCATGGTCTCGAGGTGCTTATTAGCCTTCTTGGCTCATCTGTCTCTAAGCAGCAACTTGATGGTGCTGTAGCTTTATGCAAGTTAGCCAACAAAGCCTCAACTTTGTCTCCTGTGGATGCTGCACCCCCTTCTCCAACACCACAGGTCTATTTAGGGGAGAAGTTTGTAAACAATCCTACGTTGTCAGATGTTACATTTTTGGTTGAAGGCAAACGGTTTTATGCTCACAGAATATGTCTACTAGCGTCTTCAGATGCATTTCGTGCAATGTTTGACGGTGGTTATAGGGAGAAGGATGCAAAGGATATTGAGATTCCAAATATTAGATGGGAAATTTTTGAGCTGATGATGAGATTTATATATACTGGATCAATAGAAATCACGCTGGATATAGCTCAAGACCTTCTCCGAGCAGCTGATCAATATCTATTAGAAGGACTTAAGAGGCTTTGTGAATACACAATTGCAAAGGATATATCACTGAAGAACGTGTTAAGTATGTATGAACTTTCAGAAGCTTTTAATGCAATATCATTGAGGCACTCATGCATCCTTTTTATATTGGAGCAATTTGATAAATTGATTGCAAGGCCTGGGCACTCTCTTCTGATTCAGCGTATAATACCGGAGATTCGTAGTTACTTCATTAAAGTTCTTACAAAGCCCAACTCCGGTAACATTCGACTGTAG 2127 0.4462 MELHKRRVHSLSERKGQKRKLDDQLHANRQISPPLLTADERAAILSQVSDQVRVLDSTFTWNEADRAAAKRATHALADLAKNEEVANVIVEGSAIPALVRHLQAPPMGDDDLVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDCGALTHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVNLLEFADPKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDIAIHFEAVAVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFASTDSDCKVHIVQRGAVQPLIEMLQSPDVQLQEMSAFALGRLAQDTHNQAGIAHNGGLVPLLNLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQEGEFIVQATKDCVAKTLKRLEEKIHGRVLKHLLYLMRVSEKGLQRRVALALAHLCSADDQRGIFMEHHGLEVLISLLGSSVSKQQLDGAVALCKLANKASTLSPVDAAPPSPTPQVYLGEKFVNNPTLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDAKDIEIPNIRWEIFELMMRFIYTGSIEITLDIAQDLLRAADQYLLEGLKRLCEYTIAKDISLKNVLSMYELSEAFNAISLRHSCILFILEQFDKLIARPGHSLLIQRIIPEIRSYFIKVLTKPNSGNIRL 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271901g00003 708 SUPERFAMILY ARM repeat 172 510 IPR016024 -
Stsc271901g00003 708 CDD BTB_POZ_ARIA_plant 528 643 - -
Stsc271901g00003 708 Gene3D - 415 523 IPR011989 -
Stsc271901g00003 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 365 407 IPR000225 GO:0005515
Stsc271901g00003 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 240 282 IPR000225 GO:0005515
Stsc271901g00003 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 148 198 IPR000225 GO:0005515
Stsc271901g00003 708 SMART BTB_4 541 638 IPR000210 GO:0005515
Stsc271901g00003 708 SMART arm_5 313 353 IPR000225 GO:0005515
Stsc271901g00003 708 SMART arm_5 137 185 IPR000225 GO:0005515
Stsc271901g00003 708 SMART arm_5 271 311 IPR000225 GO:0005515
Stsc271901g00003 708 SMART arm_5 469 509 IPR000225 GO:0005515
Stsc271901g00003 708 SMART arm_5 354 394 IPR000225 GO:0005515
Stsc271901g00003 708 SMART arm_5 82 136 IPR000225 GO:0005515
Stsc271901g00003 708 SMART arm_5 187 227 IPR000225 GO:0005515
Stsc271901g00003 708 SMART arm_5 229 269 IPR000225 GO:0005515
Stsc271901g00003 708 Pfam Armadillo/beta-catenin-like repeat 313 352 IPR000225 GO:0005515
Stsc271901g00003 708 Pfam Armadillo/beta-catenin-like repeat 194 226 IPR000225 GO:0005515
Stsc271901g00003 708 Pfam Armadillo/beta-catenin-like repeat 229 268 IPR000225 GO:0005515
Stsc271901g00003 708 Gene3D Potassium Channel Kv1.1; Chain A 524 667 IPR011333 -
Stsc271901g00003 708 Gene3D - 48 414 IPR011989 -
Stsc271901g00003 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 324 366 IPR000225 GO:0005515
Stsc271901g00003 708 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 702 IPR044282 -
Stsc271901g00003 708 MobiDBLite consensus disorder prediction 1 26 - -
Stsc271901g00003 708 Pfam BTB/POZ domain 534 635 IPR000210 GO:0005515
Stsc271901g00003 708 SUPERFAMILY POZ domain 532 636 IPR011333 -
Stsc271901g00003 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 198 233 IPR000225 GO:0005515
Stsc271901g00003 708 ProSiteProfiles BTB domain profile. 541 608 IPR000210 GO:0005515
Stsc271901g00003 708 MobiDBLite consensus disorder prediction 1 28 - -
Stsc271901g00003 708 SUPERFAMILY ARM repeat 68 160 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271901g00003 Stsc-Chr271901 14573 21073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271901g00003 207 508 U-box Gene Family AT3G46510 26.403 4.82e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc271901g00003 BTB 3.9e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271901g00003 - - gmx:100784348 1207.59