Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271900g00019 ATGAACGGTGCGAGAGGGGGAGTGAGGGATGAGAGTGGGAAACACGGTAAGGACACTGGCGTTGCCGGAAGGAGACACAAGGGGGAGAGTGGGGGCGGGTTTGCACCAGGAGCTAGGAGGTTCTATAACTGGGGAGGGAGTGAACGGATGAGAAACCATCGTAGATGGCGTGGTGGACTGCACTCTGCAAAGGTGCCCCATACTGTCTTCGTCGATAACCTACCAAGGGATGTCACAAAGAGGGCCATGTACAAAGAATTTGGAAAGGATGGTTACATTTCGGACATCTTCGTCTCAAGAAAGGTGAGGAGAAACTCAACGGGCGCTTTTGCATTCATAAGATTCATATCCTATGAGGCGACTGTCAAAGCTCTAAAGAGGCTAAATGGAACTCGCTGGAAGGAAACCAATCTCTATGTTGGGCTGTCTAAATCATGTAAAGGATATGGATGGGGAAAGGTAAGTCATTACTCACATAAACAGCCGATGAAGCCCCAGAAAAGCTCAACGAAATGGGTTGTGGTCAAATGCCAAACAACGAAGAAACAGAGGTTGCAGAGGAGCTTACATGGTGTCTCTGTAAAGCCCATTGAATTCAGAAAAATCATGGACCACCTATTAGATGAATGGAAGGGCCCTGGCAAGATAGAATGTCGCGACGTCGGACCGTATAGATGTCTATTAACGTTTGACTCACCAGAAATCAGGGATAATGCATTGCAGTGTGAACTGCTTCGGTCTACGTTCGATGAAACAAGGATGCACTGGGATATATTTTGGTGTCTTTCAAGGAGTGTATGGATTGAAGTTTTGGGAATGCCAATCTGCCTATGGAGCAAGGAAAACTTCACCAAGATTGCTGAACTATGGGGGAAGGTTATAGAATTTGATCATAGAGCAGGGGAAGCCAAGTCATATAGCACCGCCAAGATCCTATTGGACTGCTTTCAATGGGAAGGAGTACATGAATGGGTTTCAATCAGAGTGAACGATAGTGTCTTCGAAGTCTTTGCAACGAACCCGGAATCGATCGTGAGAGAAACTCCGGTGGAAGATGAAGGAACTCCGACAAGCCTAAGCATTGGAAACGTTTGTGACCCACAACTCGAGGCAATCATTGATTGCAACTTGGATACAGTGAACACATTTAACTTCGACAGTGGTTCTGGAAGTCGCTGCATTGGAAACCGCTTCATTGGCATCGAGTCGGGTGTGGACTGCGGATCATGTCCATATCCACCTGGATTCGGGCCTTGCTCAGATCGAACCCACGTCCATCATGAGTTGGCTAGGGTTAAAGAATTTCCCCAATTCGTGAATGTCGTCTCTAATGAGGTTGAGAGGAATGGTGTAGACTTGTCGCCGCTGGTGCCAGTGCCTGTGACGGATCAAGACATTGGTGCCGTGCAAAGTGGTACTAATCTGTCGCCTGAGGATAGCCGGTATTCTCTGGAAGGGAGCGAAGAAACTCTGTATCGTATTAACGACGGTGGCTGGTGTGGGCTAAAAGGAATTCTCGATACTGGAGTGGAGGCTGGTGGTGACTTGACGTGTCTTAGGGGGTTTGAGCGGCATAATTCAAATAAGGCGAACACAGACCAGAACGGTGTGTGCCCTGTTGAGCCGTGTGATGGAAATAAGGGGAACAACGATGGTGAGAAGGGATGTAACGACAGATTTAAAGTTCTGAATGCAACTGAAAGTAGGAGCTAG 1713 0.4775 MNGARGGVRDESGKHGKDTGVAGRRHKGESGGGFAPGARRFYNWGGSERMRNHRRWRGGLHSAKVPHTVFVDNLPRDVTKRAMYKEFGKDGYISDIFVSRKVRRNSTGAFAFIRFISYEATVKALKRLNGTRWKETNLYVGLSKSCKGYGWGKVSHYSHKQPMKPQKSSTKWVVVKCQTTKKQRLQRSLHGVSVKPIEFRKIMDHLLDEWKGPGKIECRDVGPYRCLLTFDSPEIRDNALQCELLRSTFDETRMHWDIFWCLSRSVWIEVLGMPICLWSKENFTKIAELWGKVIEFDHRAGEAKSYSTAKILLDCFQWEGVHEWVSIRVNDSVFEVFATNPESIVRETPVEDEGTPTSLSIGNVCDPQLEAIIDCNLDTVNTFNFDSGSGSRCIGNRFIGIESGVDCGSCPYPPGFGPCSDRTHVHHELARVKEFPQFVNVVSNEVERNGVDLSPLVPVPVTDQDIGAVQSGTNLSPEDSRYSLEGSEETLYRINDGGWCGLKGILDTGVEAGGDLTCLRGFERHNSNKANTDQNGVCPVEPCDGNKGNNDGEKGCNDRFKVLNATESRS 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271900g00019 570 CDD RRM_SF 69 140 - -
Stsc271900g00019 570 MobiDBLite consensus disorder prediction 8 25 - -
Stsc271900g00019 570 Gene3D - 48 171 IPR012677 -
Stsc271900g00019 570 SMART rrm1_1 68 141 IPR000504 GO:0003723
Stsc271900g00019 570 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 136 IPR000504 GO:0003723
Stsc271900g00019 570 Pfam Domain of unknown function (DUF4283) 181 312 IPR025558 -
Stsc271900g00019 570 SUPERFAMILY RNA-binding domain, RBD 67 241 IPR035979 GO:0003676
Stsc271900g00019 570 MobiDBLite consensus disorder prediction 1 34 - -
Stsc271900g00019 570 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271900g00019 Stsc-Chr271900 128109 130109 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271900g00019 54 141 Eukaryotic Initiation Factors Gene Family AT1G71770 38.889 3.18e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271900g00019 - K13126 ahf:112794598 153.295