Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271899g00016 ATGTACCCCACTACTCTTATCCCTCCTTCTGCTTCTTCTCTTGCTTTCGCCTCCCCAATTCACACAATCCATCATGCACCTCTTTTTTCGCGGAACCACCACCACCACCACCACCACCATTGCTCATCGCTTTCTGCTGCAACCGGCACCACTCAACTCTCAACCGTTCCATGGGGCTGCGATTCTGATTCCTTGGAGAACGCATCTGCCTTGCAGAAGTGGCTCTCGGAGTCTGGGCTTCCGCCGCAGAAGATGAGCATTCAGAGAGTCGACGTCGGAGAGAGGGGCCTCGTTGCCTTAAAGAACATCAGGAAAGGGGAGAAGCTCCTCTTCGTACCTCCCTCTCTCGTCATCACCCAAGATTCCGAATGGACATGCCCCGAAGCTGGTGCAATTTTGAAGAAGAACTCGGTGCCGGATTGGCCATTGCTTGCAACTTATCTCATCAGTGAAGCCAGCTTCATGGAATCTTCAAGATGGAGCAACTATATTTCAGCCCTACCTCGCCAGCCTTATTCACTTCTTTACTGGTCACAAGCCGAACTAGATCGCTATTTGGAAGCTTCACAGATTAGGGAGAGAGCAGTTGACAGGATTAATAATGTTATTGGAACATACAATGATTTGAAGCTCAGAATATTTTCCAAACACCCTGATTTGTTCCCTGAAGAGTTGTTCAACATTGAGTCCTTCAAATGGTCATTTGGCATTCTTTTTTCTCGTTTGGTTCGGTTACCCTCAATGGATGGAAGGGTTGCCTTGGTTCCATGGGCAGACATGTTGAATCATAGTTGTGAAGTGGATACCTTTTTGGATTACGATAATTTATCAAAGGGAATTGTCTTTACTACAGATCGGCCATATCAACCAGGTGAGCAGGTGTTTATTTCATATGGGAAAAAATCAAATGGGGAGCTTCTGTTATCGTATGGGTTTGTTCCAAGGGAAGGTGCAAATCCTCGTGATTCAGTTGAGTTGTCAGTGTCACTCAAGAAATCTGATAAATCCTACAAGGACAAATTAGAACTCTTGAAGAAGTATGGATTATCAGCATCTCAATGTTTTCCAGTACAGATTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGTCCTCCAAGCATGAGAGCGCAATTTGAAGAGATGGCTGCGGCAGCATCAAATAAAACTAACACCAAGAAAGATTTGAGATATCCTGAAATAGAGGAGGAAGCATTGCAGTTCATACTTGACAGTTGCGAATCCAGTATATCAAAATACAACTATTTCTTAGAGGCAAGTGGATCTCTGGATCTAGATGTGACTTCGCCGAAACAACTCAACCGAAGACTCTTTTTGAAACAGCTCGCGGTGGACTTGTGTACAAGCGAGCGAAGGATATTATTCCGTACTCAATATATTCTGAGGAGAAGACTGAGGGATATGAGGGCTGGTGAGTTAAGAGCTTTAAAAATCTTTGACGGGCTACGGAACCTTTTCCAATGA 1497 0.4456 MYPTTLIPPSASSLAFASPIHTIHHAPLFSRNHHHHHHHHCSSLSAATGTTQLSTVPWGCDSDSLENASALQKWLSESGLPPQKMSIQRVDVGERGLVALKNIRKGEKLLFVPPSLVITQDSEWTCPEAGAILKKNSVPDWPLLATYLISEASFMESSRWSNYISALPRQPYSLLYWSQAELDRYLEASQIRERAVDRINNVIGTYNDLKLRIFSKHPDLFPEELFNIESFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVDTFLDYDNLSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPREGANPRDSVELSVSLKKSDKSYKDKLELLKKYGLSASQCFPVQITGWPLELMAYAYLAVSPPSMRAQFEEMAAAASNKTNTKKDLRYPEIEEEALQFILDSCESSISKYNYFLEASGSLDLDVTSPKQLNRRLFLKQLAVDLCTSERRILFRTQYILRRRLRDMRAGELRALKIFDGLRNLFQ 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271899g00016 498 SUPERFAMILY SET domain 67 315 IPR046341 -
Stsc271899g00016 498 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 65 427 - -
Stsc271899g00016 498 CDD SET_RBCMT 82 313 IPR044431 GO:0016279|GO:0018022
Stsc271899g00016 498 Gene3D set domain protein methyltransferase, domain 1 24 312 - -
Stsc271899g00016 498 FunFam Rubisco methyltransferase family protein 318 481 - -
Stsc271899g00016 498 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 51 312 - -
Stsc271899g00016 498 ProSiteProfiles SET domain profile. 83 299 IPR001214 GO:0005515
Stsc271899g00016 498 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 329 494 IPR036464 -
Stsc271899g00016 498 SMART set_7 83 305 IPR001214 GO:0005515
Stsc271899g00016 498 Gene3D - 318 487 IPR036464 -
Stsc271899g00016 498 Pfam SET domain 95 299 IPR001214 GO:0005515
Stsc271899g00016 498 Pfam Rubisco LSMT substrate-binding 332 465 IPR015353 -
Stsc271899g00016 498 PIRSF RMT_SET 9 495 IPR011192 GO:0009507|GO:0030785
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271899g00016 Stsc-Chr271899 93165 97086 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc271899g00016 SET 2.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271899g00016 - - gmx:100803319 783.482