Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271899g00015 ATGGATGGTGTCCTGTATTGCAAGACACACTTTGAACAGCTTTTCAAGGAATCTGGAAATTTTAGTAAGAACTTTCAAACAGCAAAGTCTTCTGATAAATCAAATGAAGCGAACAAGGCTCCAAGCAGACTCTCATCCATGTTTAGTGGAACTCTAGACAAATGCTCAGTTTGTGGAAAAACAGTGTATCCACTGGAAAAGATGTCGATGGAAGGGGAGTGCTATCACAAGACATGCTTTAGGTGTGCTCATTCAGGATGTCCTCTCACACACTCCAACTATGCTGCATTGGGTGGTGTCCTCTATTGCAAGCACCATTTCCAGCAGCTCTTCATGGAGAAAGGTAACTACAGCCATGTTCTCCAGGCTGCTAAGGACAAGAAGGTCAATGCTACTCCCCCTTCTGAACCCGCCGAAGAATCCGGTGAGAAGCCGGATTCCGAGGAGAATAAAGAAGAAGAAGAAGCACCTAAGGAAGAAGAAGAACCAAAGCCAGAAGAAGAATAG 507 0.4458 MDGVLYCKTHFEQLFKESGNFSKNFQTAKSSDKSNEANKAPSRLSSMFSGTLDKCSVCGKTVYPLEKMSMEGECYHKTCFRCAHSGCPLTHSNYAALGGVLYCKHHFQQLFMEKGNYSHVLQAAKDKKVNATPPSEPAEESGEKPDSEENKEEEEAPKEEEEPKPEEE 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271899g00015 168 SMART lim_4 54 106 IPR001781 -
Stsc271899g00015 168 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 81 120 - -
Stsc271899g00015 168 Gene3D Cysteine Rich Protein 49 166 - -
Stsc271899g00015 168 Pfam LIM domain 55 110 IPR001781 -
Stsc271899g00015 168 ProSiteProfiles LIM domain profile. 53 113 IPR001781 -
Stsc271899g00015 168 MobiDBLite consensus disorder prediction 146 168 - -
Stsc271899g00015 168 PANTHER OS06G0237300 PROTEIN 1 41 - -
Stsc271899g00015 168 MobiDBLite consensus disorder prediction 124 168 - -
Stsc271899g00015 168 FunFam LIM domain and actin-binding 1 49 119 - -
Stsc271899g00015 168 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 1 25 - -
Stsc271899g00015 168 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 47 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271899g00015 Stsc-Chr271899 67654 69086 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc271899g00015 LIM 9.9e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271899g00015 - - gmx:100779513 251.906