Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271899g00013 ATGGGAAGGAAACCCTGCTGTGAGAAGAAGGGTTTGAAGAAAGGTCCATGGACTGCTGAAGAAGATGAAATCCTTTCTAACTACATCAAAAACAATGGTGGCCATGGTAGCTGGCGTTCTCTCCCTAAGATAACAGGACTGCTTCGTTGTGGGAAAAGTTGCAGGCTTAGGTGGACAAACTATCTTAGACCTGACATTAAAAGAGGTCCCTTTACTTCTGAGGAAGAAAAACTTGTTATACAACTTCATGGCATCCTTGGAAATAGGTGGGCTGCTATTGCTTCTCAGTTACCAGGAAGAACAGATAATGAGATAAAGAACTTGTGGAACACACACTTGAAGAAGCGCCTCAAGAACATGGGAATCGATCCGAAAACACACGAGTCTGTCGCCTCGCCACATTACCCCTTCGACAAGGCACACTCCTCGTCGATCTCCACGCGGCACATGGCTCAGTGGGAGAGTGCTAGGCTTGAAGCAGAGGCAAGGCTCTCAACAGAATCATCAAAATTCAACAACAACAAGAACAATGCTTCTTCCCTCGGCGGCGAAGAAGGCAAGAGTACTAATGAATCGGACTACTTCCTCCGGATTTGGAACTCGGAAGTAGGCGAGGCGTTTCGCAGCGTTGGCAAATCGGATAACAAAGGTGGCGGATGCTGCCTGCAGAGTGATAGTCCTGTTTCAGCAGGATCATGTTCTAACAAATGTGAATCATCATCAGTGGCCTTAAACCAATCAGGTACCTCAAACAATGGAGGTGGAATAATGAATGATCATGTTGTGAAGGAAGAAGAAGAAGAAGGAGGTATGGTTGTTCATCATGGTTCTGATTCATCATGCTCTAATGAATTGGAATTGGAAGATTCATCTGACACTGCATTGCAGCTATTGTTAGATTTCCCTATAAACAATGACATGAGCTTCTTAGAGGGTAACTCTTTTGATTGCCACATTTAA 960 0.4469 MGRKPCCEKKGLKKGPWTAEEDEILSNYIKNNGGHGSWRSLPKITGLLRCGKSCRLRWTNYLRPDIKRGPFTSEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLKNMGIDPKTHESVASPHYPFDKAHSSSISTRHMAQWESARLEAEARLSTESSKFNNNKNNASSLGGEEGKSTNESDYFLRIWNSEVGEAFRSVGKSDNKGGGCCLQSDSPVSAGSCSNKCESSSVALNQSGTSNNGGGIMNDHVVKEEEEEGGMVVHHGSDSSCSNELELEDSSDTALQLLLDFPINNDMSFLEGNSFDCHI 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271899g00013 319 MobiDBLite consensus disorder prediction 164 189 - -
Stsc271899g00013 319 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Stsc271899g00013 319 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Stsc271899g00013 319 Gene3D - 70 134 - -
Stsc271899g00013 319 CDD SANT 16 62 IPR001005 -
Stsc271899g00013 319 MobiDBLite consensus disorder prediction 165 187 - -
Stsc271899g00013 319 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc271899g00013 319 FunFam MYB-related transcription factor 13 67 - -
Stsc271899g00013 319 SMART sant 67 115 IPR001005 -
Stsc271899g00013 319 SMART sant 13 64 IPR001005 -
Stsc271899g00013 319 FunFam MYB transcription factor 70 117 - -
Stsc271899g00013 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Stsc271899g00013 319 CDD SANT 70 113 IPR001005 -
Stsc271899g00013 319 Gene3D - 11 68 - -
Stsc271899g00013 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc271899g00013 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 238 - -
Stsc271899g00013 319 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Stsc271899g00013 319 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271899g00013 Stsc-Chr271899 61154 63348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271899g00013 1 313 MYB Transcription Factor Family AT3G61250 60.317 6.09e-123 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc271899g00013 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271899g00013 K09422 - gmx:100816569 431.409