LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc271899g00012	ATGAACAACAATAGAGCGAGGTACCCGCCTGGGATCGGATTAGGTCGTGGGAATGGTGGTTTCAACACTGGGTTTCAACAGAGGCCACCTCAGCAACAGTATGTGCAACGACACATGGTTCAACAGCAGCAGCAGCATCCTCAGCAGTACCAGCACTATCAGCAGAATCAGCAACAACAACAACCGCAGCAGCAGCAGCAGCTACAACAACAACAGCAACAGTGGTTAAGAAGGACCCAATTGGGTGGTGGTGGAAGTAATGACAATAACGTTGTTGAGGAGGTTGAGAAGACCGTACAGTCAGAAGCTGTGGACTCAAGTTCACAAGATTGGAAGGCAAGATTAAAGATTCCACCAGCTGATACACGCTATAAGACTGAGGATGTAACAGCAACTAAAGGAAATGAATTTGAAGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCAATTCAAGAAGAAAGTATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCAAGGGCTAAGAATGGAACAGGCAAAACAGCTGCATTTTGTATTCCTGCATTGGAAAAAATTGATCAAGATAATAATGTTATTCAAGTTGTTATATTGGTCCCAACCAGAGAATTGGCTCTGCAGACTTCTCAAGTGTGTAAAGAGCTTGGTAAACATTTGAAAATTCAGGTTATGGTAACCACCGGTGGTACCAGCCTAAAAGATGACATTATGCGACTATATCAACCAGTTCATTTGCTGGTTGGAACTCCAGGAAGAATTTTAGATCTTGCAAAGAAGGGCGTTTGTGTTTTGAAAGATTGCTCTATGCTAGTTATGGATGAGGCTGATAAGCTTCTGTCGCCGGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTTCCTCCAACCCGTCAAATCCTGATGTTTTCTGCAACATTTCCCGTTACTGTTAAGGACTTCAAAGATAGATATCTTCGAAAACCGTATATCATTAACCTTATGGATGAGCTAACTCTGAAGGGTATCACACAGTATTATGCATTTGTAGAAGAGAGACAGAAACTTCAAATAAACCAGTCAATCATCTTCTGTAATTCGGTCAATCGGGTCGAACTCCTTGCCAAGAAAATAACCGAACTCGGATATTCTTGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGTAACAGAGTATTCCACGATTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGATCTTTTTACTAGAGGTATAGACATCCAAGCAGTCAACGTTGTTATTAACTTTGATTTTCCGAAGAACTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGAAGATTTGGACACCTTGGTTTAGCCGTGAACTTGATTACATATGAGGATCGCTTCAACTTATATAGGATTGAACAAGAGCTTGGCACCGAAATAAAACAAATTCCACCACACATTGATCAGGCTATATATTGTCGGTGA	1500	0.4153	MNNNRARYPPGIGLGRGNGGFNTGFQQRPPQQQYVQRHMVQQQQQHPQQYQHYQQNQQQQQPQQQQQLQQQQQQWLRRTQLGGGGSNDNNVVEEVEKTVQSEAVDSSSQDWKARLKIPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQYYAFVEERQKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR	499

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc271899g00012	499	Pfam	DEAD/DEAH box helicase	160	324	IPR011545	GO:0003676\|GO:0005524
	Stsc271899g00012	499	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	166	336	IPR014001	-
	Stsc271899g00012	499	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	346	496	IPR001650	-
	Stsc271899g00012	499	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	69	498	-	-
	Stsc271899g00012	499	Pfam	Helicase conserved C-terminal domain	357	457	IPR001650	-
	Stsc271899g00012	499	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	205	479	IPR027417	-
	Stsc271899g00012	499	CDD	SF2_C_DEAD	347	466	-	-
	Stsc271899g00012	499	Gene3D	-	90	339	IPR027417	-
	Stsc271899g00012	499	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	282	290	IPR000629	-
	Stsc271899g00012	499	MobiDBLite	consensus disorder prediction	1	71	-	-
	Stsc271899g00012	499	FunFam	ATP-dependent RNA helicase DDX6	116	339	-	-
	Stsc271899g00012	499	CDD	DEADc_DDX6	137	337	-	-
	Stsc271899g00012	499	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	135	163	IPR014014	GO:0003724
	Stsc271899g00012	499	SMART	ultradead3	154	350	IPR014001	-
	Stsc271899g00012	499	Gene3D	-	340	499	IPR027417	-
	Stsc271899g00012	499	MobiDBLite	consensus disorder prediction	20	71	-	-
	Stsc271899g00012	499	Coils	Coil	54	74	-	-
	Stsc271899g00012	499	SMART	helicmild6	376	457	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc271899g00012	Stsc-Chr271899	51330	56409	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc271899g00012	135	496	Eukaryotic Initiation Factors Gene Family	AT3G19760	37.166	8.32e-92	284

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc271899g00012	K12614		-	tcc:18614173	812.757