Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271899g00001 ATGGATCATGGGGACCAAATGGCATCTTACTATATGCAGCAGAGAGGAATACCTGGTTCTGGAGGACAGCCGGAGTTTTCAGCCGGTATTCGGTCGCTGTCTAACCCCAACCTACCATTTCAATCCGGCATTGGTGGTGGTGGCTCAATTGGATCCACTATACAGCTAGAGTCTTCGGGGATTTCGTCCCATGGTGTCAATGTTGGTGCTCCTCCGGGGGCACCACCCGGGGAACCTGTCAAAAGGAAGAGAGGAAGGCCGAGGAAATATGGGACTGATGGAACTGTGTTGGCTCTTACACCAACTTCGTCGAGTCATCCTGGAGCTATGACGACACCGGGCCAGAAACGTGGCAGAGGACGGCCCCCGGGGAGTGGGAAGAAACAGCAATTGGCATCGCTTGGTGAAATGATTTCTGGTTCAGCCGGGATGGGATTCACTCCTCATGTCATCAACATAGCAAGTGGAGAAGACATTGCAACGAAAATTATGGCATTTTCTCAGCAGGGGTCTAGATTTGTGTTTATTTTGTCTGCTACCGGTGCTGTTTCCACCGTCACGCTTCGCCAACCTTCAACCTCAGGCGGCTCTGTCACATATGAGGGGCGTTTCGAGATATTGTGCCTGTCGGGCTCTTACTTGCTTACTGATAATGCTGGCTCCCGCAATCGATCTGGCGGACTAACTGTTTCCCTTGCTAGTCCTGACGGACGAGTCATTGGTGGAGGAGTTGGAGGAGTGCTCATTGCATCAAGTCCTGTTCAGGTTATTGTTGGAAGCTTTATATGGGGAGGATCAAGGACCAAGAACAAGAAAAAGGAAAGCTCTGAAGGGGTAGAGGCTGCTATGGAGTCGGATCATCAAGCGGTTCACAATCCGGCCGCACTGAACAGCATTTCGGCTAGTCAAAATCTCACTCAAACCCCATCTCTGAGTCCGTGGCCGGCGTCGCGACCGTTGGATATGCGCAATTCCCATGTTGACATCGATCTAATGCGCGGGTGA 1005 0.5174 MDHGDQMASYYMQQRGIPGSGGQPEFSAGIRSLSNPNLPFQSGIGGGGSIGSTIQLESSGISSHGVNVGAPPGAPPGEPVKRKRGRPRKYGTDGTVLALTPTSSSHPGAMTTPGQKRGRGRPPGSGKKQQLASLGEMISGSAGMGFTPHVINIASGEDIATKIMAFSQQGSRFVFILSATGAVSTVTLRQPSTSGGSVTYEGRFEILCLSGSYLLTDNAGSRNRSGGLTVSLASPDGRVIGGGVGGVLIASSPVQVIVGSFIWGGSRTKNKKKESSEGVEAAMESDHQAVHNPAALNSISASQNLTQTPSLSPWPASRPLDMRNSHVDIDLMRG 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271899g00001 334 Gene3D - 148 283 - -
Stsc271899g00001 334 SMART AT_hook_2 81 93 IPR017956 GO:0003677
Stsc271899g00001 334 SMART AT_hook_2 116 128 IPR017956 GO:0003677
Stsc271899g00001 334 CDD DUF296 147 261 IPR005175 -
Stsc271899g00001 334 MobiDBLite consensus disorder prediction 1 33 - -
Stsc271899g00001 334 MobiDBLite consensus disorder prediction 61 129 - -
Stsc271899g00001 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 146 263 - -
Stsc271899g00001 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 65 304 IPR039605 GO:0003680
Stsc271899g00001 334 MobiDBLite consensus disorder prediction 96 111 - -
Stsc271899g00001 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 148 261 IPR005175 -
Stsc271899g00001 334 ProSiteProfiles PPC domain profile profile. 142 285 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271899g00001 Stsc-Chr271899 7055 10534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271899g00001 80 334 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 56.274 2.99e-78 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271899g00001 - - gmx:100814615 501.516