Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271898g00019 ATGTCCGAAGAAGATTTCCAATTTTCTTGCCATGGGGAGGTTATGCTCACACCAAGTGAGTTAGAGGAGTTGTTTTCCCTCATTAATCAACCCGCCGAAAACTTTGACCCGGCTAGCCCTAGTTCCTTCGGTTCACAGGGGTCGAACCGAGCGGTTTACTCGACCCACGAGAGAAAACTCAGGCGCAAGCAATCGAACCGGGAGTCGGCCAGGAGGTCCAGGTGGAGAAAGAAGAGACATTTAGAGAACCTCACGAACCAACTGAACCGGTTGAAAGCCGAGAACCGGGAACTGAAAAACCGGCTCGGTTTGACCACACAGCACAACATGCTACTATCCTTTGAGAATGAACACCTAAAATTTGAATCCGCAAACCTTGTAGCCAAACTCTTGGATGCATATCGGATCTTAGGCACCATGCTTTCACAATAG 432 0.4884 MSEEDFQFSCHGEVMLTPSELEELFSLINQPAENFDPASPSSFGSQGSNRAVYSTHERKLRRKQSNRESARRSRWRKKRHLENLTNQLNRLKAENRELKNRLGLTTQHNMLLSFENEHLKFESANLVAKLLDAYRILGTMLSQ 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271898g00019 143 SUPERFAMILY Leucine zipper domain 58 112 IPR046347 GO:0003700|GO:0006355
Stsc271898g00019 143 MobiDBLite consensus disorder prediction 65 79 - -
Stsc271898g00019 143 MobiDBLite consensus disorder prediction 32 79 - -
Stsc271898g00019 143 CDD bZIP_plant_GBF1 59 108 IPR045314 GO:0003700|GO:0006355
Stsc271898g00019 143 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 56 102 IPR004827 GO:0003700|GO:0006355
Stsc271898g00019 143 SMART brlzneu 54 118 IPR004827 GO:0003700|GO:0006355
Stsc271898g00019 143 Coils Coil 74 108 - -
Stsc271898g00019 143 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 61 76 IPR004827 GO:0003700|GO:0006355
Stsc271898g00019 143 FunFam BZIP transcription factor 56 107 - -
Stsc271898g00019 143 Pfam bZIP transcription factor 58 108 IPR004827 GO:0003700|GO:0006355
Stsc271898g00019 143 Gene3D - 56 128 - -
Stsc271898g00019 143 MobiDBLite consensus disorder prediction 32 53 - -
Stsc271898g00019 143 PANTHER BZIP TRANSCRIPTION FACTOR 44 38 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271898g00019 Stsc-Chr271898 189354 190071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271898g00019 13 137 bZIP Transcription Factor Family AT3G49760 40.000 7.50e-20 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc271898g00019 bZIP_1 7.9e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271898g00019 - - gmx:102668006 176.407